Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr9g1862 ATGGGTACGAAATCAGTTGTGGATTTAATTGAGTCTTCCTCTGAAGTTCATTTTTCTGGGTTTCACATGGATGGCTTAGAGCAAAGAAAAGCTGGCACAGAGCAACCGACTACTTCAGCGACTGATATGTATAAACAACCTTTTGTCATAGGTGTTGCTGGTGGAGCAGCATCTGGCAAGACAGCAGTTTGTGATATGATTATTCAGCAGCTTCATGACCAAAGAGTTGTACTTGTCAATCAGGATTCTTTTTACCATAATTTGACTGAGGAGGAACTTACAAGAGTACAAGATTACAACTTCGATCATCCTGAAGCTTTTGATACCAAGCAATTGCTATGTGTCATGGACAAGTTGAAGCATGGCCAAGCAGTAGATATTCCAAAGTATGACTTTAAGGGTTACAAAAGCGATGTGTTTCCAGCAAGAAGGGTAAACCCTGCAGATGTTATAATTTTGGAAGGTATCCTTGTTTTCCATGATCCGCGTGTTCGGGCATTGATGAATATGAAGATATTTGTTGACACAGATGCGGATGTTCGTTTGGCAAGAAGGATTAAGCGTGATACTGCTGAGAATGCTCGTGATATTGGAGCTGTGCTTGATCAGTATTCTAAATTTGTGAAGCCAGCTTTTGATGACTTTATTCTTCCCACAAAGAAGTATGCTGATATCATTATTCCCCGTGGAGGAGATAATCATGTGGCTATTGACTTGATTGTTCAGCATATTCGCACAAAGCTTGGTCAGCATGACTTGTGTAAAATATATCCTAACTTATATGTCATTCAGTCTACTTTTCAGATACGGGGTATGCATACCCTGATTCGTGATTCTCAGATAACAAAACATGACTTTGTATTTTATTCTGACCGTTTGATTCGTTTGGTTGTAGAACATGGCCTAGGGCATCTTCCATTTACAGAAAAGCAAGTAATCACTCCAACTGGGTCGGTATACAGTGGTGTGGATTTCTGTAAGAGGTTGTGTGGTGTCTCCATCATCCGGAGTGGGGAGAGTATGGAAAATGCTCTACGAGCATGCTGCAAAGGAATCAAGATTGGTAAAATTCTTATTCATAGAGAAGGTGACAATGGTCAACAGCTAATATATGAGAAGTTGCCCAATGATATCTCAGATAGGCATGTATTACTGTTGGATCCTATCTTAGGCACAGGTAATTCGGCTGTTCAAGCAATTTCTTTACTTTTAAGGAATGGTGTTCCAGAGTCAAACATTATATTTCTCAATCTCATATCAGCACCTCAAGGAGTTCATGTGGTCTGCAAAAGTTTTCCGAGAATAAAAATTGTGACATCTGAGATTGACATTTGTTTGAATAAAGATTTCCGTGTCATACCTGGTATGGGCGAGTTTGGGGATCGTTACTTTGGAACTGATGATGATGACCAGCAGGTGGTGGCCCCTTCACAGTAG 1437 0.4029 MGTKSVVDLIESSSEVHFSGFHMDGLEQRKAGTEQPTTSATDMYKQPFVIGVAGGAASGKTAVCDMIIQQLHDQRVVLVNQDSFYHNLTEEELTRVQDYNFDHPEAFDTKQLLCVMDKLKHGQAVDIPKYDFKGYKSDVFPARRVNPADVIILEGILVFHDPRVRALMNMKIFVDTDADVRLARRIKRDTAENARDIGAVLDQYSKFVKPAFDDFILPTKKYADIIIPRGGDNHVAIDLIVQHIRTKLGQHDLCKIYPNLYVIQSTFQIRGMHTLIRDSQITKHDFVFYSDRLIRLVVEHGLGHLPFTEKQVITPTGSVYSGVDFCKRLCGVSIIRSGESMENALRACCKGIKIGKILIHREGDNGQQLIYEKLPNDISDRHVLLLDPILGTGNSAVQAISLLLRNGVPESNIIFLNLISAPQGVHVVCKSFPRIKIVTSEIDICLNKDFRVIPGMGEFGDRYFGTDDDDQQVVAPSQ* 479
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr9g1862 478 CDD UMPK 49 247 IPR000764 -
Apr9g1862 478 TIGRFAM udk: uridine kinase 46 247 IPR000764 -
Apr9g1862 478 Pfam Uracil phosphoribosyltransferase 265 466 - -
Apr9g1862 478 CDD PRTases_typeI 324 439 IPR000836 -
Apr9g1862 478 Pfam Phosphoribulokinase / Uridine kinase family 49 235 IPR006083 GO:0005524|GO:0016301
Apr9g1862 478 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 38 240 IPR027417 -
Apr9g1862 478 PRINTS Uridine kinase signature 47 64 - -
Apr9g1862 478 PRINTS Uridine kinase signature 77 88 - -
Apr9g1862 478 PRINTS Uridine kinase signature 122 137 - -
Apr9g1862 478 PRINTS Uridine kinase signature 179 189 - -
Apr9g1862 478 PRINTS Uridine kinase signature 193 204 - -
Apr9g1862 478 PRINTS Uridine kinase signature 215 228 - -
Apr9g1862 478 SUPERFAMILY PRTase-like 250 467 IPR029057 -
Apr9g1862 478 PANTHER URIDINE KINASE 15 469 - -
Apr9g1862 478 PANTHER URIDINE KINASE 15 469 - -
Apr9g1862 478 Gene3D - 251 466 IPR029057 -
Apr9g1862 478 Gene3D - 43 250 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr9g1862 Apr-Chr9 27344028 27351145 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr9g1862 1 469 PRT Gene Family AT4G26510 84.778 0.0 821
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr9g1862 K00876 - gmx:100798205 913.679
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr9g1862 9 27344028 27351145 Apr9g1862 9 27344028 27351145 ECH
Apr10g1718 10 30018005 30025809 Apr9g1862 9 27344028 27351145 PCT