Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr9g1860 ATGTCAATAAGCTTAATGAATCTGTTACTTTCTCCCAAAATCTTCTCCCTCACCTTGCTTCTCTTGATAAACTCTCTTTGCTTTTCTTATTGTTACTCCCTTAATGAACAAGGACAGGCGCTTTTAGCATGGAAGAACAGTTTAAACAGTTCTGCAGATGCATTAGCATCTTGGAATTCTTCAAACCCAAGCCCATGCAACTGGTTTGGGGTGCACTGCAACTTACAAGGAGAGGTGGTTGAGATAAACCTGAAGTCAGTGAATTTGCAAGGTTCATTGCCTTCAAATCTTCAATCTCTCAGGTCCTTGAAGATTCTTGTCCTCTCATCAACCAACATCACAGGAAGGATTCCAAAAGAAATTGGATACTGTGAAGAGCTCATTGCCATTGATCTCAGTGGCAATTCTCTCTTTGGTGAAATCCCAGAAGAAATTTGCAGGCTAAGCAAACTGCAGAGTTTGGCTCTCCATGCCAACTTTCTTGAAGGCAACATTCCATCAAACATAGGAAATTTGACAACTCTTGTGAACTTGACACTCTATGACAACAAACTGAGTGGTAAAATTCCAAAGAGTATTGGCTACTTAAGAGAGCTCCAAGTGTTCAGAGCAGGAGGGAACACAAACCTTAAGGGTGAGATGCCATGGGACATTGGAAACTGCACCAAGTTGGTGATGTTAGGCCTTGCAGAAACCAGCATTTCTGGGAGTCTTCCTTCTTCAATAGGAATGCTGAAAAGAATTCAGACCATAGCCATATACACAACTCAGTTGTCAGGCTCTATCCCAGAAGAGATTGGGAAGTGCAGTGAGTTGCAGAACCTGTACTTGTATCAGAACTCAATATCTGGTTCAATTCCAAGTCAAATTGGAGAGCTAAAAAAACTTCAGAATCTACTCTTATGGCAAAACAATATAGTAGGAACAATCCCAGAGGAACTTGGAAGCTGCACAGAACTCAATGTCATAGACTTGTCAGAAAATCAACTCACAGGTAGCATACCAACCAGTTTTGGTAAGCTATCAAATCTGCAAGGGCTTCAACTGAGTGTTAATCAGCTTTCAGGTATTATACCTCCTGAAATCACAAATTGCACTTCCCTGACTCAACTAGAAGTTGACAACAATGCTGTTTCTGGCGAGATTCCTCCTCTTATTGGCAACTTGAGAAGCTTGACTCTGTTCTTTGCATGGCAGAACAAGCTCACAGGAAAAATCCCAGATAGTCTTTCGCAGTGCCAAGATCTCCAGGCACTTGATCTCTCTTACAACTTTTTAACTGGTCCAATTCCCAAACAACTATTTGGACTGAGGAATCTCACTAAACTGCTGCTTCTTTCCAATGACTTTTCGGGCTTTATACCACCTGAGATAGGTAATTGCACAAGTCTCTACAGGTTGAGGTTAAATCACAATAGACTGGCAGGTACCATTCCATCTGAGATTACCAACTTGAAGCATTTGAACTTTTTGGATATTAGCAGCAATCATCTTGTTGGGGAGATTCCTGCAACACTATCCAGTTGCCAAAATCTTGAGTTTTTGGACCTCCATTCAAATAGTCTCACTGGTTCAGTACCATATAATCTGCCCAAAAGCCTGCAGTTAATAGACCTCTCAGACAATAGGCTAACAGGTGCACTGAGTCATTCCATTGGTTCATTGACTGAACTAACCAAACTCATCTTGGGAAAGAATCAGCTCAGTGGAAGCATCCCAGCAGAGATCCTATCTTGCTCTAAGTTACAACTTCTAGACTTGGGAAGCAACAGTTTCTCCGGTGAAATTCCCAAGGAAATTGCTCAAATTCCTTCACTAGAAATCTTTCTCAACCTCAGCTGTAATCAATTTTCTGGAGAAATCCCACTCCAATTCTCAAGTCTTAGAAAACTTGGAGTGCTTGACCTCTCCCACAACAAACTCTCTGGGGACTTGGATGCTCTTTCCAACCTTCAGAACCTTGTTTCATTAAATGTTTCCTTCAATGACTTCTCTGGTGAATTACCGAACACCCCTTTCTTCCGAAAGCTCCCTCTCAGTGATCTCACTGCAAATAATGGTCTCTACATTGCTGGTGGTGTTGTAACTCCATCTGACAGAATGGAAGCCAAGGGTCATGTCAGATTGGCTATGAAGATTATAATGTCCATTCTCTTAGTCACCAGTGCAGTACTAGTACTGATCACAATCCATGTCTTGATCCGTGCTCATGTTGCTAACAAAGCACTCATGGGAAACAACAGTTGGGTGATGACTTTGTTTCACAAGTTTGAATTCTCTATTGATGACATTCTCCATAGTTTGACATCATCCAATGTGATTGGCACTGGAAGTTCTGGTGTTGTGTACAAAGTCACAGTTCCGAATGGCCAAACATTAGCAGTTAAAAGGATGTGGTCATCAGCAGAATCTGGAGCATTTACTTCTGAAATTCAAACATTAAGTTCAATAAGACACAAGAATATCATCAAGCTTCTGGGTTGGGGGTCCAGTAAGAACATGAAGCTTCTGTTTTATGACTACCTCCCTAATGGAAGCTTGAGCTCATTGCTTCATGGTTCAGGAAAGGGAAAAGCAGAATGGGAGACCAGATATGATGTTATGTTGGGAGTGGCTCATGCACTTTCATATTTGCACCATGATTGTGTGCCTTCCATACTGCATGGAGATGTCAAAACCATGAATGTGTTATTAGGTCCTGGCTATCAACCTTACCTTGCTGACTTTGGACTGGCTAGAATAGCAAGTGAAAATGGTGATTTTACTGTTTCCAAGCTTGTTCAAAGACCCTACCTTGCTGGTTCCTATGGATACATGGCTCCTGAGCATGCATCAATGCAACGGATCACTGAGAAGAGTGACGTGTATAGTTTTGGGGTGGTCCTACTTGAGGTCCTGACAGGAAGGCACCCACTAGACCCAACCCTTCCTGGGGGTGCACACTTGGGTCAGTGGGTTAGGAACCATTTAGCAAGCAAAGGAGACCCATATGACACTCTTGACCCAAAGCTGAGAGGTAGAACTGACTCTACCATGCATGAAGTGCTACAAACTCTAGCTGTGTCATTTCTATGTCTAAGCACCCGAGCTGAGGACCGTCCAACAATGAAGGACACTGTTGCAATGCTCAAGGAAATTCGACCTTTCGAGGCCTCAAGCACAGATCCTGATGTATTGAAAGGAGTTTTAACAGCACCTACTTCTCCATCACCTAAGAAGGTAGTTTTACATGAAACTTCCAAGTGTTCCTTTAATTTCACAGAGGACTCAATCTGCTGA 3279 0.4239 MSISLMNLLLSPKIFSLTLLLLINSLCFSYCYSLNEQGQALLAWKNSLNSSADALASWNSSNPSPCNWFGVHCNLQGEVVEINLKSVNLQGSLPSNLQSLRSLKILVLSSTNITGRIPKEIGYCEELIAIDLSGNSLFGEIPEEICRLSKLQSLALHANFLEGNIPSNIGNLTTLVNLTLYDNKLSGKIPKSIGYLRELQVFRAGGNTNLKGEMPWDIGNCTKLVMLGLAETSISGSLPSSIGMLKRIQTIAIYTTQLSGSIPEEIGKCSELQNLYLYQNSISGSIPSQIGELKKLQNLLLWQNNIVGTIPEELGSCTELNVIDLSENQLTGSIPTSFGKLSNLQGLQLSVNQLSGIIPPEITNCTSLTQLEVDNNAVSGEIPPLIGNLRSLTLFFAWQNKLTGKIPDSLSQCQDLQALDLSYNFLTGPIPKQLFGLRNLTKLLLLSNDFSGFIPPEIGNCTSLYRLRLNHNRLAGTIPSEITNLKHLNFLDISSNHLVGEIPATLSSCQNLEFLDLHSNSLTGSVPYNLPKSLQLIDLSDNRLTGALSHSIGSLTELTKLILGKNQLSGSIPAEILSCSKLQLLDLGSNSFSGEIPKEIAQIPSLEIFLNLSCNQFSGEIPLQFSSLRKLGVLDLSHNKLSGDLDALSNLQNLVSLNVSFNDFSGELPNTPFFRKLPLSDLTANNGLYIAGGVVTPSDRMEAKGHVRLAMKIIMSILLVTSAVLVLITIHVLIRAHVANKALMGNNSWVMTLFHKFEFSIDDILHSLTSSNVIGTGSSGVVYKVTVPNGQTLAVKRMWSSAESGAFTSEIQTLSSIRHKNIIKLLGWGSSKNMKLLFYDYLPNGSLSSLLHGSGKGKAEWETRYDVMLGVAHALSYLHHDCVPSILHGDVKTMNVLLGPGYQPYLADFGLARIASENGDFTVSKLVQRPYLAGSYGYMAPEHASMQRITEKSDVYSFGVVLLEVLTGRHPLDPTLPGGAHLGQWVRNHLASKGDPYDTLDPKLRGRTDSTMHEVLQTLAVSFLCLSTRAEDRPTMKDTVAMLKEIRPFEASSTDPDVLKGVLTAPTSPSPKKVVLHETSKCSFNFTEDSIC* 1093
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr9g1860 1092 Gene3D Ribonuclease Inhibitor 609 692 IPR032675 -
Apr9g1860 1092 Gene3D Ribonuclease Inhibitor 431 530 IPR032675 -
Apr9g1860 1092 SMART LRR_sd22_2 172 198 - -
Apr9g1860 1092 SMART LRR_sd22_2 317 346 - -
Apr9g1860 1092 SMART LRR_sd22_2 269 301 - -
Apr9g1860 1092 SMART LRR_sd22_2 628 653 - -
Apr9g1860 1092 SMART LRR_sd22_2 485 514 - -
Apr9g1860 1092 SMART LRR_sd22_2 531 557 - -
Apr9g1860 1092 Pfam Leucine rich repeat N-terminal domain 35 74 IPR013210 -
Apr9g1860 1092 Gene3D Transferase(Phosphotransferase) domain 1 842 1058 - -
Apr9g1860 1092 SUPERFAMILY RNI-like 81 403 - -
Apr9g1860 1092 Gene3D Phosphorylase Kinase; domain 1 737 841 - -
Apr9g1860 1092 ProSitePatterns Protein kinases ATP-binding region signature. 774 796 IPR017441 GO:0005524
Apr9g1860 1092 PANTHER LRR RECEPTOR-LIKE KINASE FAMILY PROTEIN 2 1059 - -
Apr9g1860 1092 SUPERFAMILY RNI-like 323 670 - -
Apr9g1860 1092 Gene3D Ribonuclease Inhibitor 531 608 IPR032675 -
Apr9g1860 1092 Gene3D Ribonuclease Inhibitor 34 192 IPR032675 -
Apr9g1860 1092 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE FAMILY PROTEIN-RELATED 2 1059 - -
Apr9g1860 1092 SMART LRR_typ_2 437 461 IPR003591 -
Apr9g1860 1092 SMART LRR_typ_2 148 172 IPR003591 -
Apr9g1860 1092 SMART LRR_typ_2 100 124 IPR003591 -
Apr9g1860 1092 SMART LRR_typ_2 485 509 IPR003591 -
Apr9g1860 1092 SMART LRR_typ_2 293 317 IPR003591 -
Apr9g1860 1092 SMART LRR_typ_2 341 365 IPR003591 -
Apr9g1860 1092 SMART LRR_typ_2 628 651 IPR003591 -
Apr9g1860 1092 SMART LRR_typ_2 555 579 IPR003591 -
Apr9g1860 1092 ProSiteProfiles Protein kinase domain profile. 768 1050 IPR000719 GO:0004672|GO:0005524|GO:0006468
Apr9g1860 1092 SMART serkin_6 768 1050 IPR000719 GO:0004672|GO:0005524|GO:0006468
Apr9g1860 1092 PRINTS Leucine-rich repeat signature 534 547 - -
Apr9g1860 1092 PRINTS Leucine-rich repeat signature 628 641 - -
Apr9g1860 1092 Gene3D Ribonuclease Inhibitor 206 430 IPR032675 -
Apr9g1860 1092 Pfam Protein kinase domain 771 1038 IPR000719 GO:0004672|GO:0005524|GO:0006468
Apr9g1860 1092 Pfam Leucine rich repeat 319 377 IPR001611 GO:0005515
Apr9g1860 1092 Pfam Leucine rich repeat 463 522 IPR001611 GO:0005515
Apr9g1860 1092 SUPERFAMILY Protein kinase-like (PK-like) 755 1043 IPR011009 -
Apr9g1860 1092 ProSitePatterns Serine/Threonine protein kinases active-site signature. 886 898 IPR008271 GO:0004672|GO:0006468
Apr9g1860 1092 ProSiteProfiles Leucine-rich repeat profile. 630 652 IPR001611 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr9g1860 Apr-Chr9 27316767 27320553 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr9g1860 31 1091 Receptor kinase-like Gene Family AT5G56040 65.079 0.0 1390
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Apr9g1860 Pkinase 1.5e-37 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr9g1860 - - gmx:100813139 1840.85
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr9g1860 9 27316767 27320553 Apr9g1860 9 27316767 27320553 ECH