Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr9g1857 ATGAATTCTCGGTGCTTCCTTCATCCACAAGAGCATAGCATGGTTCCATTTTCTTCAAATTCTGCAACAGGAGAAGATAGAGTGGCTAGTGCTCGAAACAGGCCTACACGTGCCACCCCACCTTCCTTTTTGGTTCGGATGGCCATGAGAATATCTAGAGCTAGATGGTTTACATTTTTAAGAAGAGTTTTTCATTACCAAAATGGATCAAGGTCCAATCTTGGCTCTAACCCTTTCAATTCTAGCACTTGGATGATGTTGGAATTTATTGCCTTGGTTGTTCAGATAATCATTACAACATTAACTTTGTCAAGTTCCAAGAGGGAGAGACCAGTTTGGCCTATGAGAATATGGATAGCTGGTTATGATATTGGTTGTATTCTTAATCTCTTGCTACTTTATGGTCGCTACCATCAAAATTATACCACTCAAGGAGATGCTCTCAGCCTTTCTGATATGGAACAGCAGAGAAACAATGAAGAAACCAGTGTGTACAGGATGTCACACTTAATGAATAAATGCCGGACTTCACTAGAGCTTTTCTTCGCCATATGGTTTGTGATGGGAAATGTTTGGATTTTTGACTCACGTTTTGGATCTTTTCATCAAGCTCCAAGACTCCATGTGCTATGCATCACTCTACTTGCTTGGAATGCAATTTGTTACTCTTTCCCTTTCCTACTGTTTCTGTTGTTATGTTGCTGTGTGCCACTAATTAGCAGCCTCCTCGGTTACAACATGAACATGGCCTCTTCTGATAGAGGAGCTTCTGAAGATCAAATTTCAAAACTTCCAAGTTGGAGACATAAAGAAGCTCGTACCAAGTTAGAGCTGGGCAATGATTCTGATGGCAGCGAAAAATTGATCAATGAATATCCTGAATGCTGCATTTGCTTAGCCAAGTACAAAGACAAAGAAGAAGTTAGACAATTGCCCTGTTCCCATATGTTCCACCTAAAATGTGTGGATCAATGGCTAAAAATTACATCCTGCTGCCCTCTTTGCAAACAAGGATTAGAAAGGTAG 1026 0.4045 MNSRCFLHPQEHSMVPFSSNSATGEDRVASARNRPTRATPPSFLVRMAMRISRARWFTFLRRVFHYQNGSRSNLGSNPFNSSTWMMLEFIALVVQIIITTLTLSSSKRERPVWPMRIWIAGYDIGCILNLLLLYGRYHQNYTTQGDALSLSDMEQQRNNEETSVYRMSHLMNKCRTSLELFFAIWFVMGNVWIFDSRFGSFHQAPRLHVLCITLLAWNAICYSFPFLLFLLLCCCVPLISSLLGYNMNMASSDRGASEDQISKLPSWRHKEARTKLELGNDSDGSEKLINEYPECCICLAKYKDKEEVRQLPCSHMFHLKCVDQWLKITSCCPLCKQGLER* 342
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr9g1857 341 CDD RING-H2_RNF111_like 293 336 - -
Apr9g1857 341 ProSiteProfiles Zinc finger RING-type profile. 295 336 IPR001841 -
Apr9g1857 341 PANTHER C3H4 TYPE ZINC FINGER PROTEIN 21 340 - -
Apr9g1857 341 SUPERFAMILY RING/U-box 294 339 - -
Apr9g1857 341 Pfam Ring finger domain 294 336 IPR001841 -
Apr9g1857 341 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 244 340 IPR013083 -
Apr9g1857 341 MobiDBLite consensus disorder prediction 16 35 - -
Apr9g1857 341 SMART ring_2 295 335 IPR001841 -
Apr9g1857 341 PANTHER RING/U-BOX SUPERFAMILY PROTEIN 21 340 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr9g1857 Apr-Chr9 27289447 27292442 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr9g1857 35 339 C3H Transcription Factor Family AT4G26580 69.608 4.48e-149 421
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr9g1857 - - gmx:100813670 616.69
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr9g1857 9 27289447 27292442 Apr9g1857 9 27289447 27292442 ECH