Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr9g1843 ATGGAGTTCATCACAACGATGACTGTTAAAGACTTGCAAGATGGGAACGGTTCTGGAGTGAACAACCAAGACTTGGCGGTGCAAGCGCCTGCAGCTGAGGCGCTTCAAGAGAATCCAAACCTGCCACTAGCGACTGTGAAGAGGTTGATGAGGAAGGGTCTTCCGTTGCATGCAAAAGTTACGGAGGAATCGAAGGAAACGATGTTGGAGTGTGTGACTGAGTTCATTGGGTTCATCACAAGTGAAGCTAACCACCAATGCCAGCTCGAGCATCGCAGAACGGTTTCGGGTGAAGATCTGATTCGTGCTTTGAAAACGTTAGGTTTCAACAACTATGCTGTGGTTCTCTCCCTTTACCTTGAACGCTTACGTCAAAATGACGCTGCTGCGCGCTTCCCCAGTCGCGTGCCACCGCCGCCACCACCTTCTTTTGCTACCGGTTTCCCTGTGATCCCTGCACCTTTCCAAACTTTTCCTGAGACATTGGAGATGGGTGGGTTTTACAATGGTGGCTCGGGTGGGTTTTACAATGGTGTCTCAGGTGGAAGTGGCTCCGGCAATGCTACTATGGCCAACTTTTGTTATGACCCTTTTGCTTAA 600 0.5 MEFITTMTVKDLQDGNGSGVNNQDLAVQAPAAEALQENPNLPLATVKRLMRKGLPLHAKVTEESKETMLECVTEFIGFITSEANHQCQLEHRRTVSGEDLIRALKTLGFNNYAVVLSLYLERLRQNDAAARFPSRVPPPPPPSFATGFPVIPAPFQTFPETLEMGGFYNGGSGGFYNGVSGGSGSGNATMANFCYDPFA* 200
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr9g1843 199 PRINTS CCAAT-binding transcription factor subunit A signature 68 86 - -
Apr9g1843 199 PRINTS CCAAT-binding transcription factor subunit A signature 87 105 - -
Apr9g1843 199 PRINTS CCAAT-binding transcription factor subunit A signature 106 124 - -
Apr9g1843 199 Gene3D Histone, subunit A 30 135 IPR009072 GO:0046982
Apr9g1843 199 PANTHER CCAAT-BINDING TRANSCRIPTION FACTOR-RELATED 23 137 IPR027113 GO:0001228|GO:0006355|GO:0016602
Apr9g1843 199 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 40 104 IPR003958 -
Apr9g1843 199 PANTHER NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT B-6 23 137 - -
Apr9g1843 199 SUPERFAMILY Histone-fold 38 127 IPR009072 GO:0046982
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr9g1843 Apr-Chr9 27193702 27200309 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr9g1843 17 174 CCAAT-HAP3 Transcription Factor Family AT1G21970 34.254 2.25e-31 112
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YB Apr9g1843 CBFD_NFYB_HMF 8.5e-19 CL0012
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr9g1843 K08065 - bvg:104886848 109.768