Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr9g1836 ATGGACAATAATGGTGCAAAGGAGCCGCTGTTGGGATCACTGGATCCTGCAACTCAAAATGCTAAACCGCCATTAAACAAGAGAAGGTTCCTCCGCTGTAGAAGTGCTCCTGCCATGGATATTGTTCCTACTGAGATAACAAATGGCAATGAATCAGTTCCTCGTAATGTGTCCATATTTGAGAATTTACATCCAAGCTTTAAAAAGGTGGCCCTCTACCTTGCAGTCTATTTAGGTGTAGGTGCTTTAATCTTCTACCTTGTGAGGAACCAGATCAAGGGGATGAAAACAGATGGAATTCTTGATGCTTTATACTTTACAATTGTGACAATGACCACTGTTGGATATGGAGACCTAGTTCCCAATAGCAGCCTTACAAAACTACTTGCATGTGCTTTTGTTTTCTCTGGAATGGCATTGATTGGACTAATCCTAAGCAAAGCAGCAGATTACTTGGTTGAGAAACAAGAAGTTTTGCTTGTTAAAGCTATGCGCATGCACAAAAAATCTGGTCCAACTGAAATTTTAAAGGAGGTTGAGATCAATAAAGCGAGATACAAATTTATTCTGGTCCTTTCCATTCTCTTGATTCTCATTATTTCAGGGACTATTTTCTTGGTCACTGTTGAGAAGTTGGATATTATTGATGCCTTCTACTGTGTTTGTTCTACATTTACAACCCTGGGTTATGGAGATAAAAGTTTCTCAACTCAAGCAGGAAGAATATTTGCTGTGTTTTGGATATTGACCGGTACTATTTCTTTAGCTCAGCTTTTCCTCTATATTGCTGAGCTAAACACTGAAAGCAGACAAAAGGAGCTTGTCAAGTGGGTTCTTACAAGGAAGATGACCAATTTGGATTTGGAGGCTGCAGATCTTGATGAGGATGGAACTGTTGGGGCTGCTGAGTTTGTTATTTATAAGCTCAAAGAGATGGGGAAGATTAGTCAAGAAGATATATCACTTGTAATGCAAGAGTTTGAAGAGCTTGATGTTGATCAGTCCGGTACACTGTCAACTTCTGACTTAACACTTACTCAGTCTTCTTAG 1050 0.3952 MDNNGAKEPLLGSLDPATQNAKPPLNKRRFLRCRSAPAMDIVPTEITNGNESVPRNVSIFENLHPSFKKVALYLAVYLGVGALIFYLVRNQIKGMKTDGILDALYFTIVTMTTVGYGDLVPNSSLTKLLACAFVFSGMALIGLILSKAADYLVEKQEVLLVKAMRMHKKSGPTEILKEVEINKARYKFILVLSILLILIISGTIFLVTVEKLDIIDAFYCVCSTFTTLGYGDKSFSTQAGRIFAVFWILTGTISLAQLFLYIAELNTESRQKELVKWVLTRKMTNLDLEAADLDEDGTVGAAEFVIYKLKEMGKISQEDISLVMQEFEELDVDQSGTLSTSDLTLTQSS* 350
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr9g1836 349 Gene3D - 172 279 - -
Apr9g1836 349 ProSitePatterns EF-hand calcium-binding domain. 331 343 IPR018247 -
Apr9g1836 349 ProSitePatterns EF-hand calcium-binding domain. 292 304 IPR018247 -
Apr9g1836 349 PANTHER TWO PORE POTASSIUM CHANNEL A 21 344 - -
Apr9g1836 349 SUPERFAMILY Voltage-gated potassium channels 67 167 - -
Apr9g1836 349 PRINTS Two pore domain K+ channel signature 223 251 IPR003280 GO:0005267|GO:0016020|GO:0071805
Apr9g1836 349 PRINTS Two pore domain K+ channel signature 297 306 IPR003280 GO:0005267|GO:0016020|GO:0071805
Apr9g1836 349 SUPERFAMILY Voltage-gated potassium channels 160 282 - -
Apr9g1836 349 MobiDBLite consensus disorder prediction 1 23 - -
Apr9g1836 349 Gene3D - 64 158 - -
Apr9g1836 349 PANTHER POTASSIUM CHANNEL, SUBFAMILY K 21 344 IPR003280 GO:0005267|GO:0016020|GO:0071805
Apr9g1836 349 Pfam Ion channel 194 265 IPR013099 -
Apr9g1836 349 Pfam Ion channel 73 153 IPR013099 -
Apr9g1836 349 SUPERFAMILY EF-hand 251 344 IPR011992 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr9g1836 Apr-Chr9 27143755 27146618 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr9g1836 54 349 Ion Channels AT5G55630 66.216 1.28e-149 424
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr9g1836 K05389 - gmx:100777388 525.013
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr9g1836 9 27143755 27146618 Apr9g1836 9 27143755 27146618 ECH