LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Apr9g1814	ATGGACGCTGCCGCCAGTAACTCCGGCGAACCCTACTTGAATTCGGAGCTCCGAATCAACGATGATCCCAATCGAACCGGGTCGGGTCAGAATTCGTCTGCTAGGTACAAGCTCATGTCGCCGGCGAAACTTCCGATCTCGAGGTCGCCGTGTATCACGATTCCTCCGGGGCTGAGTCCGACTTCGTTTTTGGAATCCCCTGTTCTTCTTTCAAACATGAAGGTGGAGCCTTCACCGACTACAGGGTCCCTTCCTAAGCTTCTACAAACAGTACATGGTTCTATGGCTTCTGCTGCATCTGCTACATTTCCTGCAACTACTGCTCGCTTCAATACCAGTAATGTTGATGACAGAAAACCAAGCTTCTTTGAGTTTAAACCATACAATAGATCAAATATGGTTCCTGAAGACTTCAACAGCCATGTAAGTAAACAATCTACTCAAGGTCCAGGAAAATCTCACTCATTTACTTCCTCGCCATTAGTTGAAAGTGAGATAGCAGTTCCCTCTAATGAATTAAGCTTATCATCACCTGTTCAAGTGGTTAGTTCTGGGGCTACTGCTCCTGTTGATGTTGATTTGGATGACATTAACCACAAAGGCAACACAGCTAATGGGCTTCAAGTCTCCTATGTTGAGGTTAGAGGCAGTGGACTTTCAGTTGCAGCTGAGAAAACATCTGATGATGGATACAATTGGCGAAAATATGGGCAAAAACATGTTAAAGGAAGTGAATTTCCACGCAGTTATTACAAATGTACACATCCTAACTGTGAAGTGAAAAAACTTTTTGAACGCTCTCATGATGGTCAAATTACTGAGATAATTTACAAGGGAAAACATGATCATCCTAAACCTCAACCAAGCTGCCGATACTCTGCTGGTAGTGCTATGTCTATTCAAGGAGAGAGATCTGATAGGGCTTCTTCTTTGGCTGGCCGAGATGACAAAGCATCCAATATGCATGGTCAGGTATCTCACCCTGCTGAGCCCAACGGTACTCCAGAGCTGTCACCTGTAGCAACAAATGATGATAGTCCAGAGGGTGCTGGGTTTGTGTCAAACAGGACAAATGATGAGGTTGATGATGACGATCCCTTCTTGAAGCGAAGAAAAATGGAACTTGGAAGTGCTGACATTGCTCCAGTAGTTAAACCTATCCGGGAACCACGAGTTGTTGTACAAACTTTAAGCGAGGTTGATATATTGGATGATGGGTACCGCTGGCGTAAGTATGGGCAGAAGGTAGTAAGGGGAAATCCTAACCCAAGGAGTTATTATAAATGCACAAATGCTGGTTGCCCCGTTAGAAAGCATGTGGAGAGGGCATCGCATGATCCAAAAGCAGTAATAACGACATACGAAGGTAAACACAACCACGATGTGCCAGCTGCAAGGAATAGCAGCCATGACATGGCAGGACCAGCAGCTGCAGCTGGACAAACACGAATTAAGTTAGAAGAAAGCGATACAATTAGCCTTGACCTCGGCATGGGCATTAGCCCAGCCGCCGAAAACAGATCACACGGGCAAGGGAAAACACTGCACTCTGAATTTGTGAACACTCAAACTCACACCAGCAATTCCAATTTCAAGTTTGTTCATACCACCGCAGCTCCTGTATACTTTGGTGTTCTAAATAACAGCACCAATCCATATGGTTCTAGAGACAATAGGAGTGATGGTTCATCTTTGAACCATTCCTCGTATCCTTGCCCACAGAACATGGGAAGAATACTAATGGGTCCATGA	1752	0.4503	MDAAASNSGEPYLNSELRINDDPNRTGSGQNSSARYKLMSPAKLPISRSPCITIPPGLSPTSFLESPVLLSNMKVEPSPTTGSLPKLLQTVHGSMASAASATFPATTARFNTSNVDDRKPSFFEFKPYNRSNMVPEDFNSHVSKQSTQGPGKSHSFTSSPLVESEIAVPSNELSLSSPVQVVSSGATAPVDVDLDDINHKGNTANGLQVSYVEVRGSGLSVAAEKTSDDGYNWRKYGQKHVKGSEFPRSYYKCTHPNCEVKKLFERSHDGQITEIIYKGKHDHPKPQPSCRYSAGSAMSIQGERSDRASSLAGRDDKASNMHGQVSHPAEPNGTPELSPVATNDDSPEGAGFVSNRTNDEVDDDDPFLKRRKMELGSADIAPVVKPIREPRVVVQTLSEVDILDDGYRWRKYGQKVVRGNPNPRSYYKCTNAGCPVRKHVERASHDPKAVITTYEGKHNHDVPAARNSSHDMAGPAAAAGQTRIKLEESDTISLDLGMGISPAAENRSHGQGKTLHSEFVNTQTHTSNSNFKFVHTTAAPVYFGVLNNSTNPYGSRDNRSDGSSLNHSSYPCPQNMGRILMGP*	584

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Apr9g1814	583	MobiDBLite	consensus disorder prediction	1	35	-	-
	Apr9g1814	583	SUPERFAMILY	WRKY DNA-binding domain	224	286	IPR036576	GO:0003700\|GO:0006355\|GO:0043565
	Apr9g1814	583	SMART	WRKY_cls	403	462	IPR003657	GO:0003700\|GO:0006355\|GO:0043565
	Apr9g1814	583	SMART	WRKY_cls	227	285	IPR003657	GO:0003700\|GO:0006355\|GO:0043565
	Apr9g1814	583	ProSiteProfiles	WRKY domain profile.	398	463	IPR003657	GO:0003700\|GO:0006355\|GO:0043565
	Apr9g1814	583	PANTHER	TRANSCRIPTION FACTOR WRKY FAMILY-RELATED	27	563	-	-
	Apr9g1814	583	MobiDBLite	consensus disorder prediction	292	306	-	-
	Apr9g1814	583	ProSiteProfiles	WRKY domain profile.	222	286	IPR003657	GO:0003700\|GO:0006355\|GO:0043565
	Apr9g1814	583	Pfam	WRKY DNA -binding domain	404	460	IPR003657	GO:0003700\|GO:0006355\|GO:0043565
	Apr9g1814	583	Pfam	WRKY DNA -binding domain	228	284	IPR003657	GO:0003700\|GO:0006355\|GO:0043565
	Apr9g1814	583	Gene3D	WRKY domain	388	464	IPR036576	GO:0003700\|GO:0006355\|GO:0043565
	Apr9g1814	583	Gene3D	WRKY domain	219	287	IPR036576	GO:0003700\|GO:0006355\|GO:0043565
	Apr9g1814	583	MobiDBLite	consensus disorder prediction	140	160	-	-
	Apr9g1814	583	MobiDBLite	consensus disorder prediction	278	364	-	-
	Apr9g1814	583	PANTHER	WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED	27	563	IPR044810	GO:0003700
	Apr9g1814	583	MobiDBLite	consensus disorder prediction	553	583	-	-
	Apr9g1814	583	SUPERFAMILY	WRKY DNA-binding domain	395	463	IPR036576	GO:0003700\|GO:0006355\|GO:0043565
	Apr9g1814	583	MobiDBLite	consensus disorder prediction	553	573	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Apr9g1814	Apr-Chr9	27013356	27019286	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Apr9g1814	39	583	WRKY Transcription Factor Family	AT4G26640	56.159	0.0	538

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	WRKY	Apr9g1814		WRKY	1.4e-25	CL0274

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Apr9g1814	-		-	gmx:100816583	1003.82

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Apr9g1814	9	27013356	27019286	Apr9g1814	9	27013356	27019286	ECH
	Apr2g0270	2	3280013	3286858	Apr9g1814	9	27013356	27019286	PCT