Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Apr9g1810 | ATGGAATCGGATCTTGGCAAGCTCTTCATTGGGGGAATTTCCTGGGACACTGATGAGGAACGACTCAAAGAATATTTTGGGAAATATGGAGAGGTGATAGAGGCTGTGATCATGAGAGATCGCACGACAGGTCGAGCTCGCGGTTTCGGATTTGTTGTCTTTGCTGATCCTGCTGTTGCCGAAAGAGTCATTATGGATAAGCACATAATTGATGGCCGCACGGTTGAAGCTAAGAAAGCTGTTCCTAGGGATGATCAGCAAACTATAAATAGACAGTCTGGTGGCGTCCACGGATCTCCTGGTCCTGGACGAACCAAAAAGATTTTCGTTGGAGGTTTACCATCAACAATCACTGAAAGTGATTTTAAGAAGTACTTTGATCAGTTTGGTTCAATTACTGATGTTGTAGTGATGTATGATCACAATACCCAGAGGCCAAGAGGTTTTGGCTTCATCACTTATGATTCAGAAGAAGCTGTGGACAAAGTTCTTTATAAGACTTTTCATGAACTCAATGGAAAGATGGTTGAGGTCAAGAGGGCAGTTCCTAAAGAGCTTTCCCCTGGACCTAGCCGGAGCCCATTGATTGGATATGGTTTGAATAGGACCAGTAGCTTCCTAAATAGTTATGCTCAAGGTTTCAATATGAATCCAATTGGAGGTTACGGAGTCAGGATGGATGGTAGGTTTAGTCCACTTACTAGTGGTAGAAGCGGGTTTACCTCATTTGGCTCCAGTGGTTATGGAATGGGAATGAATTTGGATTCAGGATTGAACCCAAGCTATGGAGGGGCTTCCAATTATGGTAGCAGTCTAGGATATGGTCGGATTAGTCCTTTCTACAATGGCAACTCCAGCAGATATACCACTCCAATTGGCTATAGTGGGAGCAATGGGAGAAGTGATTTGCTTGTGAACTCAACTTCTAGGAATGTTTGGGGAAATGGGGGCCTGAACAATGCTGCCAATAATCCAATCAGCCCTGGTACTTACTTGGGATCTGGAAGTGGGGCTTTTGGTGTTTCAATTGGAAATAGTGGCACCAATTGGGGTGCATCTGTTCCAAACCAGGGTGGAGGAGGGGCTGCTTCTGGGTATAGTACTTGGGGTAATGCTTATGAAGGTGGGGATAACAGCATTGGATTAGGAAGTGGAGGATATGGAAGGAACAGCAGCCCGAGTGTGACTCAGTCCTCAACATTCACTGCACCAACTGTTGGTTATGAAGGATCCTATGGGGACTTGTACCGCAGTGGCTCAGTATACAGTGACTCAACTTGGCGGTCTGCTGCTTCTGAGATAGATGCTTCTGCTTCATTTGGTTACGGACTTGGTGGTATAGGTTCAGATGATCCAGTAAAGAATTCTGAGGGTTTTATTGGAAACTACAATGTAACAAGTAGACAATCAAATAGAGGAATTGCTGCTTAG | 1431 | 0.4472 | MESDLGKLFIGGISWDTDEERLKEYFGKYGEVIEAVIMRDRTTGRARGFGFVVFADPAVAERVIMDKHIIDGRTVEAKKAVPRDDQQTINRQSGGVHGSPGPGRTKKIFVGGLPSTITESDFKKYFDQFGSITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVLYKTFHELNGKMVEVKRAVPKELSPGPSRSPLIGYGLNRTSSFLNSYAQGFNMNPIGGYGVRMDGRFSPLTSGRSGFTSFGSSGYGMGMNLDSGLNPSYGGASNYGSSLGYGRISPFYNGNSSRYTTPIGYSGSNGRSDLLVNSTSRNVWGNGGLNNAANNPISPGTYLGSGSGAFGVSIGNSGTNWGASVPNQGGGGAASGYSTWGNAYEGGDNSIGLGSGGYGRNSSPSVTQSSTFTAPTVGYEGSYGDLYRSGSVYSDSTWRSAASEIDASASFGYGLGGIGSDDPVKNSEGFIGNYNVTSRQSNRGIAA* | 477 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Apr9g1810 | 476 | Gene3D | - | 6 | 88 | IPR012677 | - | |
Apr9g1810 | 476 | PANTHER | RNA-BINDING (RRM/RBD/RNP MOTIFS) FAMILY PROTEIN | 1 | 476 | - | - | |
Apr9g1810 | 476 | Gene3D | - | 103 | 189 | IPR012677 | - | |
Apr9g1810 | 476 | SMART | rrm1_1 | 107 | 179 | IPR000504 | GO:0003723 | |
Apr9g1810 | 476 | SMART | rrm1_1 | 7 | 78 | IPR000504 | GO:0003723 | |
Apr9g1810 | 476 | MobiDBLite | consensus disorder prediction | 82 | 105 | - | - | |
Apr9g1810 | 476 | ProSiteProfiles | Eukaryotic RNA Recognition Motif (RRM) profile. | 6 | 82 | IPR000504 | GO:0003723 | |
Apr9g1810 | 476 | CDD | RRM2_DAZAP1 | 104 | 183 | IPR034131 | GO:0003723 | |
Apr9g1810 | 476 | SUPERFAMILY | RNA-binding domain, RBD | 104 | 209 | IPR035979 | GO:0003676 | |
Apr9g1810 | 476 | ProSiteProfiles | Eukaryotic RNA Recognition Motif (RRM) profile. | 106 | 183 | IPR000504 | GO:0003723 | |
Apr9g1810 | 476 | PANTHER | RNA-BINDING PROTEIN MUSASHI HOMOLOG RBP6 | 1 | 476 | - | - | |
Apr9g1810 | 476 | SUPERFAMILY | RNA-binding domain, RBD | 4 | 104 | IPR035979 | GO:0003676 | |
Apr9g1810 | 476 | CDD | RRM1_hnRNPA_hnRNPD_like | 8 | 78 | - | - | |
Apr9g1810 | 476 | Pfam | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 8 | 75 | IPR000504 | GO:0003723 | |
Apr9g1810 | 476 | Pfam | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 108 | 166 | IPR000504 | GO:0003723 |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Apr9g1810 | Apr-Chr9 | 26986937 | 26991126 | Dispersed/Wgd |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Apr9g1810 | 2 | 185 | Eukaryotic Initiation Factors Gene Family | AT2G36660 | 29.592 | 3.38e-15 | 76.3 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Apr9g1810 | K14411 | - | gmx:100788515 | 832.017 |