Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr9g1810 ATGGAATCGGATCTTGGCAAGCTCTTCATTGGGGGAATTTCCTGGGACACTGATGAGGAACGACTCAAAGAATATTTTGGGAAATATGGAGAGGTGATAGAGGCTGTGATCATGAGAGATCGCACGACAGGTCGAGCTCGCGGTTTCGGATTTGTTGTCTTTGCTGATCCTGCTGTTGCCGAAAGAGTCATTATGGATAAGCACATAATTGATGGCCGCACGGTTGAAGCTAAGAAAGCTGTTCCTAGGGATGATCAGCAAACTATAAATAGACAGTCTGGTGGCGTCCACGGATCTCCTGGTCCTGGACGAACCAAAAAGATTTTCGTTGGAGGTTTACCATCAACAATCACTGAAAGTGATTTTAAGAAGTACTTTGATCAGTTTGGTTCAATTACTGATGTTGTAGTGATGTATGATCACAATACCCAGAGGCCAAGAGGTTTTGGCTTCATCACTTATGATTCAGAAGAAGCTGTGGACAAAGTTCTTTATAAGACTTTTCATGAACTCAATGGAAAGATGGTTGAGGTCAAGAGGGCAGTTCCTAAAGAGCTTTCCCCTGGACCTAGCCGGAGCCCATTGATTGGATATGGTTTGAATAGGACCAGTAGCTTCCTAAATAGTTATGCTCAAGGTTTCAATATGAATCCAATTGGAGGTTACGGAGTCAGGATGGATGGTAGGTTTAGTCCACTTACTAGTGGTAGAAGCGGGTTTACCTCATTTGGCTCCAGTGGTTATGGAATGGGAATGAATTTGGATTCAGGATTGAACCCAAGCTATGGAGGGGCTTCCAATTATGGTAGCAGTCTAGGATATGGTCGGATTAGTCCTTTCTACAATGGCAACTCCAGCAGATATACCACTCCAATTGGCTATAGTGGGAGCAATGGGAGAAGTGATTTGCTTGTGAACTCAACTTCTAGGAATGTTTGGGGAAATGGGGGCCTGAACAATGCTGCCAATAATCCAATCAGCCCTGGTACTTACTTGGGATCTGGAAGTGGGGCTTTTGGTGTTTCAATTGGAAATAGTGGCACCAATTGGGGTGCATCTGTTCCAAACCAGGGTGGAGGAGGGGCTGCTTCTGGGTATAGTACTTGGGGTAATGCTTATGAAGGTGGGGATAACAGCATTGGATTAGGAAGTGGAGGATATGGAAGGAACAGCAGCCCGAGTGTGACTCAGTCCTCAACATTCACTGCACCAACTGTTGGTTATGAAGGATCCTATGGGGACTTGTACCGCAGTGGCTCAGTATACAGTGACTCAACTTGGCGGTCTGCTGCTTCTGAGATAGATGCTTCTGCTTCATTTGGTTACGGACTTGGTGGTATAGGTTCAGATGATCCAGTAAAGAATTCTGAGGGTTTTATTGGAAACTACAATGTAACAAGTAGACAATCAAATAGAGGAATTGCTGCTTAG 1431 0.4472 MESDLGKLFIGGISWDTDEERLKEYFGKYGEVIEAVIMRDRTTGRARGFGFVVFADPAVAERVIMDKHIIDGRTVEAKKAVPRDDQQTINRQSGGVHGSPGPGRTKKIFVGGLPSTITESDFKKYFDQFGSITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVLYKTFHELNGKMVEVKRAVPKELSPGPSRSPLIGYGLNRTSSFLNSYAQGFNMNPIGGYGVRMDGRFSPLTSGRSGFTSFGSSGYGMGMNLDSGLNPSYGGASNYGSSLGYGRISPFYNGNSSRYTTPIGYSGSNGRSDLLVNSTSRNVWGNGGLNNAANNPISPGTYLGSGSGAFGVSIGNSGTNWGASVPNQGGGGAASGYSTWGNAYEGGDNSIGLGSGGYGRNSSPSVTQSSTFTAPTVGYEGSYGDLYRSGSVYSDSTWRSAASEIDASASFGYGLGGIGSDDPVKNSEGFIGNYNVTSRQSNRGIAA* 477
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr9g1810 476 Gene3D - 6 88 IPR012677 -
Apr9g1810 476 PANTHER RNA-BINDING (RRM/RBD/RNP MOTIFS) FAMILY PROTEIN 1 476 - -
Apr9g1810 476 Gene3D - 103 189 IPR012677 -
Apr9g1810 476 SMART rrm1_1 107 179 IPR000504 GO:0003723
Apr9g1810 476 SMART rrm1_1 7 78 IPR000504 GO:0003723
Apr9g1810 476 MobiDBLite consensus disorder prediction 82 105 - -
Apr9g1810 476 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 6 82 IPR000504 GO:0003723
Apr9g1810 476 CDD RRM2_DAZAP1 104 183 IPR034131 GO:0003723
Apr9g1810 476 SUPERFAMILY RNA-binding domain, RBD 104 209 IPR035979 GO:0003676
Apr9g1810 476 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 106 183 IPR000504 GO:0003723
Apr9g1810 476 PANTHER RNA-BINDING PROTEIN MUSASHI HOMOLOG RBP6 1 476 - -
Apr9g1810 476 SUPERFAMILY RNA-binding domain, RBD 4 104 IPR035979 GO:0003676
Apr9g1810 476 CDD RRM1_hnRNPA_hnRNPD_like 8 78 - -
Apr9g1810 476 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 8 75 IPR000504 GO:0003723
Apr9g1810 476 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 108 166 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr9g1810 Apr-Chr9 26986937 26991126 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr9g1810 2 185 Eukaryotic Initiation Factors Gene Family AT2G36660 29.592 3.38e-15 76.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr9g1810 K14411 - gmx:100788515 832.017
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr9g1810 9 26986937 26991126 Apr9g1810 9 26986937 26991126 ECH
Apr2g0267 2 3245252 3249270 Apr9g1810 9 26986937 26991126 PCT