Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr9g1789 ATGGCATCTTCTTCAGACTCGTGGGTGAAGGAATATAATGAAGCACAGAAACTTGCTGATGATATAAGTGGCATGATTTCTGAGCTGAGTTTGTTTCCTGCATCTGGACCAGAAACTCAGTGTCATTCATCTGCTATAAGAAGGAAAATTACAATATTGGGAACCAGGCTTGATAGCTTGCAATCCTTTTTGTCAAAGCTTCCTGTTTCTGGGAAGCAGCCTATATCTGAGAAGGAGATGAATCGTCGCAAGGACACGCTTGCGAATTTGAGATCAAAAGTTAACCAAATGGCTTCCACATTAAACATGTCAAACTTTGCAAATAGGGATAGTTTGCTTGGGCCAGAAATAAAACCAGATGCAATGAGCCGAACAGTTGGCCTGGACAACAATGGAGTTGTTGGACTTCAACGGCAAATTATGAAAGAACAAGATGAGGGCCTTGAGAAATTGGAGGAGACTGTGGCAAGTACAAAACATATTGCTTTGGCAGTGAATGAGGAGCTGGATCTACACACTAGGCTCATTGATGACCTGGACCAACATGTAGATGTCACAGATTCTCGGCTTAGGCGGGTGCAGAAGAACTTAGCAGTTTTAAATAAACGAACCAAGGGTGGTTGCTCCTGCCTGTGCATGCTTTTATCAGTGGTTGGTATAGTGGTTTTGGTTGTTGTCATTTTGCTATTGATAAAATATTTGTAA 705 0.4184 MASSSDSWVKEYNEAQKLADDISGMISELSLFPASGPETQCHSSAIRRKITILGTRLDSLQSFLSKLPVSGKQPISEKEMNRRKDTLANLRSKVNQMASTLNMSNFANRDSLLGPEIKPDAMSRTVGLDNNGVVGLQRQIMKEQDEGLEKLEETVASTKHIALAVNEELDLHTRLIDDLDQHVDVTDSRLRRVQKNLAVLNKRTKGGCSCLCMLLSVVGIVVLVVVILLLIKYL* 235
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr9g1789 234 ProSiteProfiles t-SNARE coiled-coil homology domain profile. 138 200 IPR000727 -
Apr9g1789 234 SUPERFAMILY SNARE fusion complex 129 199 - -
Apr9g1789 234 PANTHER TARGET SNARE COILED-COIL DOMAIN-CONTAINING PROTEIN-RELATED 1 228 - -
Apr9g1789 234 Gene3D - 140 202 - -
Apr9g1789 234 CDD SNARE_Qc 141 198 - -
Apr9g1789 234 Pfam SNARE domain 175 226 IPR000727 -
Apr9g1789 234 PANTHER SYNTAXIN 1 228 IPR045242 -
Apr9g1789 234 SMART tSNARE_6 133 200 IPR000727 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr9g1789 Apr-Chr9 26861441 26863559 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr9g1789 1 234 SNARE and Associated Proteins AT1G16240 71.064 2.43e-119 337
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr9g1789 K08503 - gmx:100782666 380.178
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr9g1789 9 26861441 26863559 Apr9g1789 9 26861441 26863559 ECH
Apr2g0238 2 2991082 2995310 Apr9g1789 9 26861441 26863559 PCT