Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr9g1744 ATGCCCTCAGCTCAAGATCCATTCTACGTTGTGAAGGAGGAGATTCAAGATTCTATTGATAAGCTGCAATCTACTTTTCACCAATGGGAAAACACTGCTGATTCTGGGGAGCGATCAAATCTTTCAAAGGAAGTTCTTGCTGCTAGTGAAAGTATTGAATGGCAGGTGGATGAATTGGACAAAGCAATCGCTGTAGCTTCTAGAGATCCTTCTTGGTATGGCATTGATGAAGTGGAGCTTGAAAGCCGGAGGAGGTGGACCAGTGATGCTCGCACCCAGGTGAGCACAGTGAAGAAAGCAGTGGAAGTTAGAAAGGGCTCAAATACAACAGAGCATGCTAGTGTAAATGGGATGCACAGGGAATTAATGAGGCTTCCTAATTCTCATCAAACTACATCCGACCAATATGCTGCCCAAGATAATGATGATTTCATAGAATCAGAATCGGATAGGCAAATGCTTCTTATAAAGAAACAGGATGAGGAGTTGGATGAGCTTAGTTTAAGTGTACAAAGAATTGGAGGTGTTGGGCTTACAATACATGACGAGCTCCTTGCACAGGAAAAGATTGTCGATGAACTTGGTAATGACATGGACAGTACATCTAATCGTCTAGATTTTGTCCAAAAAAAAGTGGCAATGGTCATGAAGAAGGCTAGTGCAAAGGGTCAAATCATGATGATATTGGGTTTGCTGGCGTTGTTCATTTTCCTCTTTATTTTGGTATTCTTTACCTAG 738 0.4187 MPSAQDPFYVVKEEIQDSIDKLQSTFHQWENTADSGERSNLSKEVLAASESIEWQVDELDKAIAVASRDPSWYGIDEVELESRRRWTSDARTQVSTVKKAVEVRKGSNTTEHASVNGMHRELMRLPNSHQTTSDQYAAQDNDDFIESESDRQMLLIKKQDEELDELSLSVQRIGGVGLTIHDELLAQEKIVDELGNDMDSTSNRLDFVQKKVAMVMKKASAKGQIMMILGLLALFIFLFILVFFT* 246
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr9g1744 245 ProSiteProfiles t-SNARE coiled-coil homology domain profile. 153 215 IPR000727 -
Apr9g1744 245 Pfam Syntaxin 6, N-terminal 6 98 IPR015260 GO:0016020|GO:0048193
Apr9g1744 245 CDD SNARE_Qc 156 213 - -
Apr9g1744 245 SMART tSNARE_6 148 215 IPR000727 -
Apr9g1744 245 Gene3D - 160 224 - -
Apr9g1744 245 Coils Coil 191 211 - -
Apr9g1744 245 Coils Coil 12 32 - -
Apr9g1744 245 SUPERFAMILY t-snare proteins 5 101 IPR010989 GO:0016020|GO:0016192
Apr9g1744 245 PANTHER SYNTAXIN PROTEIN 1 244 - -
Apr9g1744 245 PANTHER SYNTAXIN 1 244 IPR045242 -
Apr9g1744 245 SUPERFAMILY SNARE fusion complex 151 215 - -
Apr9g1744 245 Pfam SNARE domain 190 241 IPR000727 -
Apr9g1744 245 Gene3D - 2 104 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr9g1744 Apr-Chr9 26530453 26534379 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr9g1744 55 245 SNARE and Associated Proteins AT1G28490 69.792 1.92e-92 268
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr9g1744 K08500 - gmx:100793612 385.571
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr2g0185 2 2490139 2494280 Apr9g1744 9 26530453 26534379 PCT