Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr9g1743 ATGGGTTGTTGTGTAAGTAAAAAAGGATCAGAGCCAGAACACATTGGTCACAGGCATGGTGGTGTGCACGATCACAAGACTCATGAGAACCAATCAAATGTTCCTTCTCATCAACCTTACAAATTACCAGAGAAACATGCTGCTGCAGCACCTCAAGCACCTTGGAATCCCACTGTTCTTGCTCCAAGTCCAAAACCTGTTCTCAAATCAGACACAATTACTGGGAAACCTTTTGAGGATGTTAGAAAGTTATATACACTTGGGAAGGAATTGGGTAGAGGCCAATTTGGAGTGACTTATCTTTGTACTGAGAATTCAACTGGCTTGCAATATGCTTGCAAGTCCATTTCAAAGAGGAAGCTTGTTAGCAAATCTGATAGGGAGGACATAAAGAGGGAGATTCAAATTATGCAGCATTTGAGTGGACAACCTAACATTGTGGAGTTCAAAGGTGCTTATGAAGATAAGCACTCAGTTCATGTTGTTATGGAGCTGTGTGCGGGTGGTGAACTTTTTGATAGGATTATTGCCAAGGGACACTATAGTGAAAGAGCTGCAGCTTCAATATGTAGACAAATTGTTAATGTTGTTCACATTTGTCATTTCATGGGGGTGATGCATAGGGATTTGAAGCCAGAGAATTTCTTGTTATCTAGTAAGGATGAAAAGGCACTTCTCAAGGCCACAGATTTTGGCTTGTCAGTCTTCATTGAAGAAGGAAAGGTGTATCGAGAGATAGTTGGCAGTGCTTACTATGTTGCTCCGGAAGTTCTAGGTCGTAGCTATGGGAAGGAAATAGATATATGGAGTGCAGGAGTTATATTATATATCTTACTTAGTGGTGTACCTCCATTCTGGGCAGGTAAACTCTTGACTTTGACATATGTAGATAGTAGGATAATCACCTGTCATATTGATTTTGAAAGTCATCCATGGCCAAGCATATCAAACAGTGCTAAGGACCTTGTTCGCAAGATGCTTATAAAGGATCCAAAGAAACGCATTACTTCTGCTCAGGTTCTAGAGCACCCATGGCTTAAAGAAGGTGGAAATGCTTCTGACAAACCAATAGACAGTGCAGTGCTTTCCAGAATGAAGCAATTCAGAGCAATGAATAAACTAAAAAAACTTGCCCTCAAGGTCATTGCTGAAAATCTTTCTGAAGAAGAGATCCAAGGTTTGAAGGCAATGTTTACAAATATGGACACTGACAAAAGTGGTACAATCACCTATGAGGAACTGAAGGCAGGATTGCAAAGACTTGGCTCAAAGCTTACTGAAGCTGAAGTGAAGCAGCTTATGGAAGCCGTAAGCGCTGATGTAGATGGAAATGGCACAATTGACTACATAGAATTCATCACTGCTACAATGCATAGATACAGGTTGGAAAGAGATGAGCATCTTTACAAGGCCTTCCAATATTTTGATAAAGATGGAAGCGGGTATATTACAAAAGATGAATTGGAAACAGCCATGAAGGAGTATGGGATGGGTGATGAAGCTACAATCAAGGAGATTATATCTGAAGTTGACACAGATAATGATGGTAGAATCAACTATGAAGAATTTTGTACAATGATGAGGAGTGGAACCCAACAAGGCAAACTATTCTAG 1614 0.4033 MGCCVSKKGSEPEHIGHRHGGVHDHKTHENQSNVPSHQPYKLPEKHAAAAPQAPWNPTVLAPSPKPVLKSDTITGKPFEDVRKLYTLGKELGRGQFGVTYLCTENSTGLQYACKSISKRKLVSKSDREDIKREIQIMQHLSGQPNIVEFKGAYEDKHSVHVVMELCAGGELFDRIIAKGHYSERAAASICRQIVNVVHICHFMGVMHRDLKPENFLLSSKDEKALLKATDFGLSVFIEEGKVYREIVGSAYYVAPEVLGRSYGKEIDIWSAGVILYILLSGVPPFWAGKLLTLTYVDSRIITCHIDFESHPWPSISNSAKDLVRKMLIKDPKKRITSAQVLEHPWLKEGGNASDKPIDSAVLSRMKQFRAMNKLKKLALKVIAENLSEEEIQGLKAMFTNMDTDKSGTITYEELKAGLQRLGSKLTEAEVKQLMEAVSADVDGNGTIDYIEFITATMHRYRLERDEHLYKAFQYFDKDGSGYITKDELETAMKEYGMGDEATIKEIISEVDTDNDGRINYEEFCTMMRSGTQQGKLF* 538
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr9g1743 537 CDD EFh_PI-PLC 394 529 - -
Apr9g1743 537 SMART serkin_6 85 346 IPR000719 GO:0004672|GO:0005524|GO:0006468
Apr9g1743 537 Gene3D Transferase(Phosphotransferase) domain 1 171 356 - -
Apr9g1743 537 ProSitePatterns Serine/Threonine protein kinases active-site signature. 205 217 IPR008271 GO:0004672|GO:0006468
Apr9g1743 537 ProSitePatterns EF-hand calcium-binding domain. 476 488 IPR018247 -
Apr9g1743 537 PANTHER SERINE/THREONINE-PROTEIN KINASE 44 533 - -
Apr9g1743 537 ProSitePatterns Protein kinases ATP-binding region signature. 91 114 IPR017441 GO:0005524
Apr9g1743 537 CDD EFh 470 528 IPR002048 GO:0005509
Apr9g1743 537 ProSiteProfiles EF-hand calcium-binding domain profile. 389 424 IPR002048 GO:0005509
Apr9g1743 537 MobiDBLite consensus disorder prediction 1 68 - -
Apr9g1743 537 ProSitePatterns EF-hand calcium-binding domain. 402 414 IPR018247 -
Apr9g1743 537 Pfam EF-hand domain pair 466 528 IPR002048 GO:0005509
Apr9g1743 537 Pfam EF-hand domain pair 394 456 IPR002048 GO:0005509
Apr9g1743 537 SUPERFAMILY EF-hand 385 527 IPR011992 -
Apr9g1743 537 Gene3D - 357 532 - -
Apr9g1743 537 ProSitePatterns EF-hand calcium-binding domain. 511 523 IPR018247 -
Apr9g1743 537 Gene3D Phosphorylase Kinase; domain 1 87 170 - -
Apr9g1743 537 CDD STKc_CAMK 85 345 - -
Apr9g1743 537 ProSitePatterns EF-hand calcium-binding domain. 440 452 IPR018247 -
Apr9g1743 537 Coils Coil 411 431 - -
Apr9g1743 537 Pfam Protein kinase domain 85 346 IPR000719 GO:0004672|GO:0005524|GO:0006468
Apr9g1743 537 SUPERFAMILY Protein kinase-like (PK-like) 85 353 IPR011009 -
Apr9g1743 537 SMART efh_1 429 459 IPR002048 GO:0005509
Apr9g1743 537 SMART efh_1 393 421 IPR002048 GO:0005509
Apr9g1743 537 SMART efh_1 502 530 IPR002048 GO:0005509
Apr9g1743 537 SMART efh_1 467 495 IPR002048 GO:0005509
Apr9g1743 537 MobiDBLite consensus disorder prediction 10 31 - -
Apr9g1743 537 PANTHER CALCIUM-DEPENDENT PROTEIN KINASE 21-LIKE 44 533 - -
Apr9g1743 537 ProSiteProfiles EF-hand calcium-binding domain profile. 463 498 IPR002048 GO:0005509
Apr9g1743 537 ProSiteProfiles EF-hand calcium-binding domain profile. 499 533 IPR002048 GO:0005509
Apr9g1743 537 ProSiteProfiles Protein kinase domain profile. 85 346 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr9g1743 Apr-Chr9 26525060 26529492 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr9g1743 1 537 EF-hand Containing Proteins AT3G20410 72.894 0.0 800
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CDPK Apr9g1743 Pkinase 7.3e-74 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr9g1743 K13412 - gmx:100794852 900.582
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr2g0182 2 2464194 2469435 Apr9g1743 9 26525060 26529492 ECH
Apr9g1743 9 26525060 26529492 Apr9g1743 9 26525060 26529492 ECH