Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr9g1742 ATGCCTATTTCCAACACTTCTCCAACCATGGCAAAGTGGCTCTCTGGAAAGATAGAATCAGTAACAAGGTGTAAGGAAGCTTTTTCTGTGCTGGTTTTTGCTGGCATTGGCGGTTCTATAGTTGAGCTATTCATGAAATCTATGGAGAGGGTTCTTTTTGCTGCATTTACCTGCATTCTGGCACTAGGAGGGTCAATAGTAGGAACAATTGCAGGAGGCATCAAAGGACAAACCACAGAAGTTGGTTTTCTTGATGGAGCTGGCAAAGGAGCAATCACAGGAGCCATTGCTGCCATGGAATTGTTAAATGTTGCTGCTGTTGATGAGCCATTGTCCAAGGTTGCCCTTTTGAACAGTTTATTAAATGGAAAAGTTTTTATGGAATGGATATGTCCAGCTGTCGCACAAGTCTATCAGTTGCATATTACCACACCAGAAATAACTTATGGAGAAGTATCAGATATTTATGATATCAAGGGAATCACAGGGATGCCCCAGAATATTATTACGAAGCTTCCTTTTCAGCAATTCAACCCTAGCAAAATGTTGAAATTGTACAATATGTCTTGCTGCTCAATTTGCTTTCAGGATTTTGAGGAAGGAGAGTTGGTGAGGATCCTTCCAAAATGTGGTCACCTTTTTCATTTAGAATGCATAGATAAGTGGCTAGTCCAACAAGGATCTTGCCCGATGTGCAGAACTTATGTTCCTGACCACATTCATAAATAG 729 0.4088 MPISNTSPTMAKWLSGKIESVTRCKEAFSVLVFAGIGGSIVELFMKSMERVLFAAFTCILALGGSIVGTIAGGIKGQTTEVGFLDGAGKGAITGAIAAMELLNVAAVDEPLSKVALLNSLLNGKVFMEWICPAVAQVYQLHITTPEITYGEVSDIYDIKGITGMPQNIITKLPFQQFNPSKMLKLYNMSCCSICFQDFEEGELVRILPKCGHLFHLECIDKWLVQQGSCPMCRTYVPDHIHK* 243
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr9g1742 242 ProSiteProfiles Zinc finger RING-type profile. 191 233 IPR001841 -
Apr9g1742 242 SMART ring_2 191 232 IPR001841 -
Apr9g1742 242 CDD RING-H2_PA-TM-RING 190 233 - -
Apr9g1742 242 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 157 239 IPR013083 -
Apr9g1742 242 SUPERFAMILY RING/U-box 190 238 - -
Apr9g1742 242 Pfam Ring finger domain 191 233 IPR001841 -
Apr9g1742 242 PANTHER RING/U-BOX SUPERFAMILY PROTEIN 16 236 - -
Apr9g1742 242 PANTHER NEP1-INTERACTING PROTEIN-LIKE 2 16 236 IPR044523 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr9g1742 Apr-Chr9 26512428 26514548 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr9g1742 52 236 C3H Transcription Factor Family AT5G66070 38.384 2.02e-39 134
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr9g1742 - K19041 gmx:100305612 344.739
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr9g1742 9 26512428 26514548 Apr9g1742 9 26512428 26514548 ECH