Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr9g1734 ATGAGAAGACCGAAATCGAAGGACTTTAGGAAGCAACAGCGAGTCTCAGAGGAGGAAGAGATAAAGCTGTTGAATTCATGGATCCAATTCCAGCAACCGGACTCCGGTTCCAACCCAATGTCTCTTCCTCCTCTCACCAAAAATGCTCCAATTGGTCGCGTCGACGACAATACCTTCTCGCGCTACGCCGGCGCGTCCAGGTTCGACCACTTTCCACTCTCTAAGAAAACCAAGGACGGTTTGCGAGAAGCCAAGTTCGTTTCCATGACCGACATTCAGAGAGCCTCTCTTCCCCACGCGCTCTGTGGCCGTGACATTCTCGGCGCCGCCAAAACTGGCTCCGGGAAAACCCTTGCCTTCATTATCCCTGTTTTGGAGAAGTTGTACAGAGAGAGATGGGGACCTGAAGATGGGGTTGGGAGCATCATAATATCCCCAACAAGAGAATTAGCTGGTCAGCTATTTGATGTGTTGAAGTGTGTTGGGAAGCACCATAATTTCAGTGCTGGCCTTCTCATTGGTGGCCGCAAGGATGTTGACATGGAGAAAGAGCGGGTCAATGAGCTCAACATATTGATCTGCACGCCCGGTAGATTGCTTCAACATATGGATGAAACTCCCAATTTTGATTGTTCACAGATGCAGGTTTTGGTACTAGATGAGGCTGATCGTATTCTTGACAGTGGATTCAAGAGGGAACTAAATGCAATCATCTCGCAACTACCAAAGCGTAGACAAACCTTGCTTTTCTCTGCAACTCAAACAAAATCGATACAAGATCTTGCGAGACTAAGTTTGAAGGATCCAGAGTATCTGAGCGTGCATGAGGAGTCTGTGACTGCCACTCCTACTCTGTTGAAGCAAATTGTGATGGTTGTTCCCCTGGATCAAAAGTTAGATATGCTGTGGAGTTTTATAAAGACACATCTACAGTCAAAAACTATTGTCTTTCTTTCGAGCTGTAAACAGGAAAGAAGAATGGCAATATATTCTGAGTTTTGTGAGAAGCGCTCAGTTCTCTTCTCAACTGATGTGGCGGCAAGAGGCCTAGATTTTAACAAGGCAGTTGATTGGGTTGTTCAGGTGGATTGTCCTGAAAATGTAGCTTCGTACATACATAGAGTTGGCCGCACTGCTCGTTATAAGTCTGGTGGAAAGTCTGTTTTGTTTCTATTGCCTTCTGAAATTCAAATGCTTGAAAAGTTAAAAGCAGCAAAGGTTCCTGTACATTTTAATAAGCCAAGGAAAGAACTACTGCAACCAGTTTCTAGTTTGTTGGCATCTTTGCTGGTCAAGTACCCAGATCTGCAGCATCGGGCTCAGAGGGCATTCATCACATATTTGAGATCTATCTATATCCAAAAGGATAAAGAGATATTTGATGTTACAAAACTACCTATCAACGAATATTCAGCATCATTAGGTTTACCAATGACCCCCAAAGTCCGTTTTCTAAACCAGAAAATTAAATCTAAAGCTGTGTCAACAAAATCAAATTTAGTTGAACCAGAAGATTCAAACAAGGAAAATGTCTTGGAGGTTTCCAGAAAGAATCTAGACACAGTTTCTTTGGAGGAAGAGGACACTGAAAATGATCTGCTTCAGTTAGCAGATACTGCAAATGAAGGCAATGTGAAGTCATCTGAAATTGGAGAAATAATACCAGCAACTCGTGTGTTGAAGAAAAAGAAGCTCAAGATTAATGTACATAGGCCACTTGGGACTAGGGTTGTATTTGACGATGAAGGCAACACACTTCCTCCGTTAGCTAGGTTAGCTGACACACAAAGTGGCAAGGAAACGTTGCTGCTTGACCCAGAACAAAAAGCTGAATACTATAGAAGGATGCGAGATGATTTAATAAAGGCTGACAAGGAAGACAAGCTTGTAGAGCGTCAGCGGCGTAGAGAAAAAAGAATCAAGCAGAAGATGAAATGGAAGGATGGGAATGCAGAAGAAGAGGAAGACCAAGGTGATATTTCTGGTTCAGGAGACGAAACTGTTGATAGACGGCATAAAAAGAGTAAAGTATACTTTGGCAGTGACAGTGACGAGGGTGAAAGAAATGAAATCACAGGAAATGCAGCTGTAAGTGCTGGCTCCGTTAGCTTGGAGGAGCAAGAAGCTCTGGCCTTGAAGTTGTTAAATTCCATGCACTCATAG 2163 0.4341 MRRPKSKDFRKQQRVSEEEEIKLLNSWIQFQQPDSGSNPMSLPPLTKNAPIGRVDDNTFSRYAGASRFDHFPLSKKTKDGLREAKFVSMTDIQRASLPHALCGRDILGAAKTGSGKTLAFIIPVLEKLYRERWGPEDGVGSIIISPTRELAGQLFDVLKCVGKHHNFSAGLLIGGRKDVDMEKERVNELNILICTPGRLLQHMDETPNFDCSQMQVLVLDEADRILDSGFKRELNAIISQLPKRRQTLLFSATQTKSIQDLARLSLKDPEYLSVHEESVTATPTLLKQIVMVVPLDQKLDMLWSFIKTHLQSKTIVFLSSCKQERRMAIYSEFCEKRSVLFSTDVAARGLDFNKAVDWVVQVDCPENVASYIHRVGRTARYKSGGKSVLFLLPSEIQMLEKLKAAKVPVHFNKPRKELLQPVSSLLASLLVKYPDLQHRAQRAFITYLRSIYIQKDKEIFDVTKLPINEYSASLGLPMTPKVRFLNQKIKSKAVSTKSNLVEPEDSNKENVLEVSRKNLDTVSLEEEDTENDLLQLADTANEGNVKSSEIGEIIPATRVLKKKKLKINVHRPLGTRVVFDDEGNTLPPLARLADTQSGKETLLLDPEQKAEYYRRMRDDLIKADKEDKLVERQRRREKRIKQKMKWKDGNAEEEEDQGDISGSGDETVDRRHKKSKVYFGSDSDEGERNEITGNAAVSAGSVSLEEQEALALKLLNSMHS* 721
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr9g1734 720 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 62 274 IPR027417 -
Apr9g1734 720 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 97 272 IPR014001 -
Apr9g1734 720 MobiDBLite consensus disorder prediction 663 689 - -
Apr9g1734 720 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 218 226 IPR000629 -
Apr9g1734 720 PANTHER ATP-DEPENDENT RNA HELICASE DDX10-RELATED 57 323 - -
Apr9g1734 720 PANTHER ATP-DEPENDENT RNA HELICASE DDX10-RELATED 323 502 - -
Apr9g1734 720 SMART ultradead3 85 289 IPR014001 -
Apr9g1734 720 CDD DEADc_DDX10 77 275 - -
Apr9g1734 720 PANTHER RNA HELICASE 323 502 - -
Apr9g1734 720 PANTHER RNA HELICASE 57 323 - -
Apr9g1734 720 CDD SF2_C_DEAD 286 391 - -
Apr9g1734 720 Gene3D - 53 278 IPR027417 -
Apr9g1734 720 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 213 398 IPR027417 -
Apr9g1734 720 SMART DUF4217_3 421 484 IPR025313 -
Apr9g1734 720 Pfam Domain of unknown function (DUF4217) 425 482 IPR025313 -
Apr9g1734 720 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 66 94 IPR014014 GO:0003724
Apr9g1734 720 SMART helicmild6 300 382 IPR001650 -
Apr9g1734 720 MobiDBLite consensus disorder prediction 639 703 - -
Apr9g1734 720 Pfam DEAD/DEAH box helicase 90 260 IPR011545 GO:0003676|GO:0005524
Apr9g1734 720 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 233 430 IPR001650 -
Apr9g1734 720 Pfam Helicase conserved C-terminal domain 287 381 IPR001650 -
Apr9g1734 720 Gene3D - 281 502 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr9g1734 Apr-Chr9 26452077 26456624 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr9g1734 66 403 Eukaryotic Initiation Factors Gene Family AT3G19760 27.248 3.42e-31 124
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr9g1734 K14776 - gmx:100792106 1258.82