Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Apr9g1709 | ATGGGGAAAAATGAGTTCCTCACACCTAAAGCAATTGCCAACCGAATCAAAGCAAAAGGACTGCAGAAGCTTCGGTGGTATTGCCAGATGTGCCAGAAGCAATGCCGGGATGAGAATGGGTTTAAATGCCACTGCATGAGTGAAGGGCACCAACGTCAAATGCAAATTTTTGGACAAAACCCATACCGGATAGTTGAGGGCTATTCTGAAGAGTTTGAGAGAGCTTTTCTTGAGCACATGAAGCGCAGCCACCGATTCAGCCGGGTGGCTGCCACTGTAGTTTATAACGAGTACATAAACGATAGACACCACATTCATATGAATTCCACTCAGTGGGCTACGCTTACTGAATTTGTTAAGTACTTGGGTCGTACTGGAAAGTATGAAGAAAAACAAGAGAAGGAGATCAGGAAACAGATTGAAAAGGCTGAGCAATTGATGCAGCTACCTCCTTCTGAGTCTGATCAGCCTTCACAGGTTGACTTTTCAAGAGAACTAAACATGGAAAATGGAGTTAAGGTAGGATTTTCTCTTGGGTCATCAGCTAGACCTGTGACCAAGGAAAAACGTGAGGAGGCATCAAAGGTGATGTTTGATGAGATTGATGAAGGAAAAAATGAGGAAAGGAATCCTCGAAACAATTTGAAGAGGAAAGAAAGTGGTGGCGGAAAATCAATTTTGGATGAAATGATGAGGGAAGAAGAGAAGAAAAAGGAAAAAATTAACAGGAAGGATTATTGGTTGCATGAGGGAATTGTTGTTAAAGGTGTCGTGCAGAAGGTGATTGACAAGTATGTTGGGGAAATAGAAATGCTTGAAAGCAAACATGTGCTCAGAGTTGATCAAGCAGAGCTTGAAACTGTGATTCCACAAGTTGGGGGCCGTGTAAAAATAGTCAATGGGGCATATCGAGGATCAATGGCTAGGCTGTTAGGGGTGGATACAGACCATTTTTCTGCTAAGGTGCAGATAGAGAAAGGTCCTTATGATGGTAGGATTCTTAAAGCGATGGAATATGAGGATATTTGTAGAGTAGCCCAGTGA | 1044 | 0.4262 | MGKNEFLTPKAIANRIKAKGLQKLRWYCQMCQKQCRDENGFKCHCMSEGHQRQMQIFGQNPYRIVEGYSEEFERAFLEHMKRSHRFSRVAATVVYNEYINDRHHIHMNSTQWATLTEFVKYLGRTGKYEEKQEKEIRKQIEKAEQLMQLPPSESDQPSQVDFSRELNMENGVKVGFSLGSSARPVTKEKREEASKVMFDEIDEGKNEERNPRNNLKRKESGGGKSILDEMMREEEKKKEKINRKDYWLHEGIVVKGVVQKVIDKYVGEIEMLESKHVLRVDQAELETVIPQVGGRVKIVNGAYRGSMARLLGVDTDHFSAKVQIEKGPYDGRILKAMEYEDICRVAQ* | 348 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Apr9g1709 | 347 | PANTHER | BNAA05G13760D PROTEIN | 129 | 346 | - | - | |
| Apr9g1709 | 347 | PANTHER | BNAA05G13760D PROTEIN | 1 | 127 | - | - | |
| Apr9g1709 | 347 | SUPERFAMILY | beta-beta-alpha zinc fingers | 26 | 66 | IPR036236 | - | |
| Apr9g1709 | 347 | SMART | Kin17_mid_2 | 52 | 141 | IPR019447 | - | |
| Apr9g1709 | 347 | Gene3D | - | 290 | 346 | IPR014722 | - | |
| Apr9g1709 | 347 | PANTHER | KIN17 KIN, ANTIGENIC DETERMINANT OF RECA PROTEIN HOMOLOG | 1 | 127 | IPR037321 | - | |
| Apr9g1709 | 347 | PANTHER | KIN17 KIN, ANTIGENIC DETERMINANT OF RECA PROTEIN HOMOLOG | 129 | 346 | IPR037321 | - | |
| Apr9g1709 | 347 | CDD | KOW_KIN17 | 292 | 345 | IPR041995 | - | |
| Apr9g1709 | 347 | Coils | Coil | 224 | 244 | - | - | |
| Apr9g1709 | 347 | Gene3D | - | 243 | 289 | - | - | |
| Apr9g1709 | 347 | Pfam | KN17 SH3-like C-terminal domain | 243 | 281 | IPR041330 | - | |
| Apr9g1709 | 347 | Gene3D | - | 60 | 219 | IPR038254 | - | |
| Apr9g1709 | 347 | Pfam | Domain of Kin17 curved DNA-binding protein | 52 | 133 | IPR019447 | - | |
| Apr9g1709 | 347 | Coils | Coil | 129 | 149 | - | - | |
| Apr9g1709 | 347 | MobiDBLite | consensus disorder prediction | 200 | 228 | - | - |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Apr9g1709 | 1 | 346 | C2H2 Transcription Factor Family | AT1G55460 | 57.729 | 4.41e-159 | 450 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Apr9g1709 | K13102 | - | gmx:100785931 | 550.436 |