Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr9g1700 ATGGAGTTTCCAAACCAAGCAATATCAGAAGGGTCTTCTCAGAAGAAAACGGGAAGAGGGAAAATAGAAATCAAACGGATCGAGAACACAACGAATAGGCAAGTTACCTTCTGCAAGCGCCGCAACGGGTTGCTCAAGAAAGCTTATGAATTGTCTGTTTTGTGCGATGCTGAAGTTGCTCTTGTTGTCTTCTCAAGCCGTGGCCGTCTCTATGAGTATGCCAACAACAGTGTTAGAGGAACTATCGAAAGGTACAAGAAAGCATGTGCTGCTTCCTCAAATGCAGAATCTGTATCCGAGGCTAATACACAGTTTTATCAGCAGGAATCATCCAAATTAAAAAGACAAATCAGAGACATTCAGAATCTAAACAGGCATATCCTTGGTGAAGCTCTTAGCTCTCTGAGTCTAAAAGAACTAAAGAATCTTGAAAGTAGATTGGAGAAAGGTTTAAGCAGAGTTAGATCCAGAAAGCACGAAACACTGTTTGCCGATATCGAGTTCATGCAAAAGCGGGAAATAGAGCTGCAAAACCATAATAATTTTCTGCGAGCTAAGATAGCTGAACACGAGAGAGCACAGCAGCAACCACAACAACAGCCGAATTTGATGCCGGGAAATGTGTGCGAGTCCATACCTTCACAGTCATATGACAGGAATTTCTTCCCTGTAAATCTCATAGATTCCAATCATCATTATTCACGCCAAGACCAGACTGCTCTACAACTTGTGTAA 735 0.4204 MEFPNQAISEGSSQKKTGRGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALVVFSSRGRLYEYANNSVRGTIERYKKACAASSNAESVSEANTQFYQQESSKLKRQIRDIQNLNRHILGEALSSLSLKELKNLESRLEKGLSRVRSRKHETLFADIEFMQKREIELQNHNNFLRAKIAEHERAQQQPQQQPNLMPGNVCESIPSQSYDRNFFPVNLIDSNHHYSRQDQTALQLV* 245
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr9g1700 244 MobiDBLite consensus disorder prediction 192 210 - -
Apr9g1700 244 ProSiteProfiles MADS-box domain profile. 17 77 IPR002100 GO:0003677|GO:0046983
Apr9g1700 244 MobiDBLite consensus disorder prediction 1 20 - -
Apr9g1700 244 MobiDBLite consensus disorder prediction 1 15 - -
Apr9g1700 244 SMART madsneu2 17 76 IPR002100 GO:0003677|GO:0046983
Apr9g1700 244 Coils Coil 106 126 - -
Apr9g1700 244 PANTHER AGAMOUS-LIKE MADS-BOX PROTEIN AGL1-RELATED 13 238 - -
Apr9g1700 244 CDD MADS_MEF2_like 18 94 IPR033896 GO:0000977|GO:0045944
Apr9g1700 244 Pfam K-box region 101 187 IPR002487 GO:0003700|GO:0005634|GO:0006355
Apr9g1700 244 PANTHER MADS BOX PROTEIN 13 238 - -
Apr9g1700 244 PRINTS MADS domain signature 19 39 IPR002100 GO:0003677|GO:0046983
Apr9g1700 244 PRINTS MADS domain signature 39 54 IPR002100 GO:0003677|GO:0046983
Apr9g1700 244 PRINTS MADS domain signature 54 75 IPR002100 GO:0003677|GO:0046983
Apr9g1700 244 Gene3D - 29 97 IPR036879 GO:0003677|GO:0046983
Apr9g1700 244 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 26 73 IPR002100 GO:0003677|GO:0046983
Apr9g1700 244 ProSiteProfiles K-box domain profile. 103 193 IPR002487 GO:0003700|GO:0005634|GO:0006355
Apr9g1700 244 MobiDBLite consensus disorder prediction 190 210 - -
Apr9g1700 244 ProSitePatterns MADS-box domain signature. 19 73 IPR002100 GO:0003677|GO:0046983
Apr9g1700 244 Coils Coil 137 157 - -
Apr9g1700 244 SUPERFAMILY SRF-like 18 93 IPR036879 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr9g1700 Apr-Chr9 26203609 26210167 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr9g1700 10 244 MADS-box Gene Family AT3G58780 69.583 3.18e-116 331
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Apr9g1700 K-box 1.4e-25 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr9g1700 K09264 - gmx:100792224 412.535