Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr9g1690 ATGGACAAACATTCTGGGGATACTATGCCGACTCGTGGTGCTACAGGTCCATCTGAGATTTTCTCGCTTAATGTTGCCAAAAAAGTGGGAAGCAGTGCATGGGGAATACCGGGTGGGACTGGTGCATTTCATGGTTCAAGTGATGCTAGCTTGTTTTGTAGTTCACTTCCTGTTCTTGCACACGAGAAGCTAAATATTTCCGACTCAGAGCATTACGGTCAATCTGTTGATGATAACTTGCCAATATTAGACAAAGGTCACAAAGAGGTTGAGGGACAAGATCCACTTGGGCATGTTGAAATAAGTGCAATTGGGAACATGCTTCCAGATGCTGATGAGTTATTAGCTGGGATAACGGATGATTTTGACCTGAGTGGGTTGCCCAGCCAACTGGAGGATCTGGATGACAATGATCTTTTTGGCAGTGGAGGGGGATTTGAAATGGATTTTGAGCCCCAAGAGAACCTTAGTCTTGGTATATCAAAGATAAGCTTATCTGATGAAGTTCATTCAAATGGTATTGGTCATTATGCAATTCCAAATGGCATGGGAACAGTGGCTGGGGAGCATCCTTACGGAGAGCATCCATCAAGGACATTATTTGTGCGGAACATCAACAGTAATGTTGAGGACTCTGAATTAAGATCTCTATTTGAGCAATATGGTGACATCAGAACACTGTACACTGCATGCAAGCATAGGGGCTTTGTGATGATATCATACTATGACATTCGAGCTGCTCGCACTGCAATGCGTTCTTTACAAAACAAGCCCTTGAGACGAAGAAAACTTGATATTCATTTTTCAATTCCTAAGGATAACCCCTCAGAAAAGGATATTAACCAAGGAACGCTTGTAGTTTTCAATTTAGATCCCTCAGTATCTAATGATGACCTTCGTCAAATATTTGGGGCTTATGGTGAGGTCAAAGAGATCAGGGAAACACCGCATAAGAGACACCATAAATTTATTGAATTTTATGATGTTAGAGCAGCAGAGGCTGCTCTTAAAGCATTAAATCGAAGTGACATTGCTGGGAAACGCATCAAACTTGAACCCAGCCGCCCTGGTGGGGCACGTCGAAACTTGATGCAGCAACTTAATCAAGAGCTGGAGCAAGATGAAACTCGAACTTTTAGACACCAAGTGGGTTCACCTATTGGCAATTCTCCTCCTGGTAACTGGGCACAATTTGGTAGTCCAGTTGAACATAACGCACTAGGTTCTTTTAGCAAATCCCCTGGTTTGAATTTTGCCAGCCCTATGAATACAAACCATTTGCCTGGATTGGCTGCTATTCTTTCCCCACATGTATCAAGCTCTCCAAAGATTGCACCAATTGGCAAGGACCTTGGAAGGGCTAATAATGCAAAGCAGATATTTGCAAGCTCTGGATTGTCACAAGGAGCTGCTTTTCAGCATTCTACGTCCTTTCCCGAGCAAAAAATTAATGCAAGTCCTAGGCCAATAACCACTTTTGGTGAATCAAATTCAAGCTCGTCAAGTATTGGAACACTGTCTGGTCCTCAATTTCTTTGGGGAAGTCCAACTCCTTACTCAGAGCATTCAAACACATCTGCCTGGTCATCTTCCATGGGGCTTCCATTTACGTCTAGTGGACAAAGGCAGGGTTTCCCTTATACTAGTCAGCATAGTTCTTTTCTTGATTCTCACCAACATCATCATGTTGGATCTGCTCCGTCTGGCCTTCCTCTTGACAGGCATTTTAGCTACTTTCCAGAGTCACCTGAAACTTCTCTCAAGAGCTCAGTTGCATTTGGGAGTATGAATCACAGTGATGGGAATATTCTGATGAACATGGGTGCTCATGCATCTCTAGGTGTTGGTATTGGCCTTACAGGAAATACTAATGAAATGAGTTCACCCAATTTCAGAATGATGTCACTACCCAGGCACACTTCCCTGTTCCTTGGAAATGGTTTATATTCTGGGTTAGGAGGTACTACCACTGAGGGAGCTGAGCGTGGTCGAAGCAGGCGACTTGACAATAGTGGGAACCAAATTGATAGCAAGAAGCTGTATCAGCTTGATCTAGACAAAATTATGAGTGGGGAAGACACAAGGACTACTTTAATGATTAAAAACATTCCTAACAAGTACACTTCGAAGATGCTGCTTGCTGCAATTGATGAGAATCACAAGGGTAGTTATGACTTTCTCTACTTGCCAATTGACTTTAAGAACAAATGTAATGTGGGTTATGCTTTCATCAATATGGTGTCTCCATCACACATCATCCCCTTCTACAAGGCATTTAATGGGAAGAAGTGGGAGAAGTTTAACAGTGAAAAAGTTGCTTCCCTGGCATATGCACGGATCCAGGGAAAGGGTGCACTTGTGACACATTTTCAGAATTCAAGCCTAATGAATGAGGATAAGCGGTGCCGGCCAATTCTGTTTCATTCTGAAGGCCAAGAGATTGGTGATCAGGAACATTTTCTCTCAAGCAATTTGAACATATGCATTCGTCAACCAGATGGTTCTTACTCAGGTGTACAAAGCTGA 2526 0.4287 MDKHSGDTMPTRGATGPSEIFSLNVAKKVGSSAWGIPGGTGAFHGSSDASLFCSSLPVLAHEKLNISDSEHYGQSVDDNLPILDKGHKEVEGQDPLGHVEISAIGNMLPDADELLAGITDDFDLSGLPSQLEDLDDNDLFGSGGGFEMDFEPQENLSLGISKISLSDEVHSNGIGHYAIPNGMGTVAGEHPYGEHPSRTLFVRNINSNVEDSELRSLFEQYGDIRTLYTACKHRGFVMISYYDIRAARTAMRSLQNKPLRRRKLDIHFSIPKDNPSEKDINQGTLVVFNLDPSVSNDDLRQIFGAYGEVKEIRETPHKRHHKFIEFYDVRAAEAALKALNRSDIAGKRIKLEPSRPGGARRNLMQQLNQELEQDETRTFRHQVGSPIGNSPPGNWAQFGSPVEHNALGSFSKSPGLNFASPMNTNHLPGLAAILSPHVSSSPKIAPIGKDLGRANNAKQIFASSGLSQGAAFQHSTSFPEQKINASPRPITTFGESNSSSSSIGTLSGPQFLWGSPTPYSEHSNTSAWSSSMGLPFTSSGQRQGFPYTSQHSSFLDSHQHHHVGSAPSGLPLDRHFSYFPESPETSLKSSVAFGSMNHSDGNILMNMGAHASLGVGIGLTGNTNEMSSPNFRMMSLPRHTSLFLGNGLYSGLGGTTTEGAERGRSRRLDNSGNQIDSKKLYQLDLDKIMSGEDTRTTLMIKNIPNKYTSKMLLAAIDENHKGSYDFLYLPIDFKNKCNVGYAFINMVSPSHIIPFYKAFNGKKWEKFNSEKVASLAYARIQGKGALVTHFQNSSLMNEDKRCRPILFHSEGQEIGDQEHFLSSNLNICIRQPDGSYSGVQS* 842
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr9g1690 841 CDD RRM3_MEI2_like 698 783 IPR034454 -
Apr9g1690 841 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 283 356 IPR000504 GO:0003723
Apr9g1690 841 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 198 271 IPR000504 GO:0003723
Apr9g1690 841 PANTHER PROTEIN MEI2-LIKE 2 14 839 - -
Apr9g1690 841 Gene3D - 186 282 IPR012677 -
Apr9g1690 841 SMART rrm1_1 199 267 IPR000504 GO:0003723
Apr9g1690 841 SMART rrm1_1 284 352 IPR000504 GO:0003723
Apr9g1690 841 SMART rrm1_1 697 773 IPR000504 GO:0003723
Apr9g1690 841 CDD RRM2_MEI2_like 282 352 - -
Apr9g1690 841 MobiDBLite consensus disorder prediction 481 502 - -
Apr9g1690 841 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 200 264 IPR000504 GO:0003723
Apr9g1690 841 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 285 350 IPR000504 GO:0003723
Apr9g1690 841 SUPERFAMILY RNA-binding domain, RBD 195 358 IPR035979 GO:0003676
Apr9g1690 841 Pfam RNA recognition motif 2 695 791 IPR007201 -
Apr9g1690 841 Gene3D - 283 380 IPR012677 -
Apr9g1690 841 PANTHER RNA RECOGNITION MOTIF-CONTAINING 14 839 - -
Apr9g1690 841 CDD RRM1_MEI2_like 197 273 IPR034453 -
Apr9g1690 841 SUPERFAMILY RNA-binding domain, RBD 697 781 IPR035979 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr9g1690 Apr-Chr9 26132600 26140156 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr9g1690 138 391 Eukaryotic Initiation Factors Gene Family AT1G71770 24.113 8.71e-07 50.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr9g1690 - - gmx:100812324 1374.38