Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr9g1672 ATGGTTTTGAAAGTTCCTCTCATTGTGGTTATCCTTGTGATATGTTCCTGTGCTGTGGAAGCCATATCTGGGAATCACAATCTCAACAAAAATGGATCTTCTCTGGCTGCAATAAAGTTTCCTAATCATCCAAGTTTCAATGCTGTCTCTTCTTCTGGGGACACTGATTGTAGTCTCTCAAATTCTGAGCAACTTGGGCATTCTGGACCTACCATGACATCAAATGAAGAGATTGATGATGATGATGATGGTGAAGGTGAAGAGGGTGAGGCTTTTCTAGCTGCAAACCCACACAAGCAATCGGTGAAACTCCATTTGAAACACAGGTCGGCGAGCAAAGATGCTGAACCTAAAAAATCTGTGATTGATTTCACAGTAAGGGATTTGACCAGAATTCAGACCCTTCACAGAAGGGTCATAGAAAAGAAGAATCAAAACACCGTTTCAAGGCTACAAGAGAAGAAATCTAAGCCGGTGATTGCTCCGGCAGCTTCGCCGGAGTATTTTGGAAGTGGGGTTTCCAGCCAGCTTGTGGCAACCTTGGAATCAGGGGTGAGTCTTGGCTCAGGTGAGTACTTCATGGATGTGTTTGTGGGAACCCCTCCTAAGCACTTTTCTCTGATACTTGATACTGGTAGTGACCTTAATTGGATTCAATGTGTTCCTTGTATGGCATGTTTTGAGCAAAGTGGGCCTTATTATGATCCTAAAGATTCTAGTTCTTTTAAGAATATAAGTTGTCATGATCCTCGGTGCCAATTGGTTTCATCCCCGGATCCACCTAAGCCTTGCAAGAATGCGAATCAAACTTGTCCCTACTTTTATTGGTATGGAGATAGTTCCAACACTACTGGTGATTTTGCATTGGAAACCTTCACTGTTAATCTTACAACACCTTCTGGGAAGTCAGAACTCAACCGTGTGGAGAATGTAATGTTTGGATGTGGTCATTGGAATAGAGGTCTCTTTCATGGAGCTGCTGGTTTGCTAGGATTGGGAAGAGGTCCATTGTCATTTGCTTCTCAATTGCAATCTCTTTATGGCCATTCCTTTTCCTATTGTCTTGTGGATAGAAATAGCAACGCAAGTGTGAGTAGCAAATTGATCTTTGGTGAGGACAAGGAGCTTCTTGGCCACCCTAACTTGAATTTCACTTCTTTTGTTGGTGGGAAAGAGAATCCAGTTGATACATTTTACTATGTTCAGATAAAATCTGTTATGGTTGATGATGAGGTGCTAAAGATTCCTGAGGATACTTGGCATTTGACAGCAGAAGGTGGTGGTGGTACAATAATTGATTCTGGTACCACTCTAACATATTTTGCTGACCCTGCTTATGAGATTATAAAGGAGGCTTTTGTGAAGAAAATTAGAGGCTATGATCTCGTTGAAGGCTTTCCTCCTCTAAAGCCATGTTATAATGTGTCTGGTATTGAAAAGATGGAGCTACCTGATTTTGGGATCTTATTTGCTGATGGAGCAGTGTGGAATTTTCCAGTGGAGAATTACTTTATCCAAATTGAGCCTGATGTTGTTTGTTTGGCTATTTTGGGGACCCCTAGATCTGCCCTTTCAATAATTGGAAACTATCAACAGCAGAATTTTCACTTACTGTATGATACGAAGAAATCTAGACTTGGGTATGCACCCATGAAATCGAGTAAGGAGGTGCCCATTCAAATTTCAAAGCGCGTTGATTGCGGCAACGAAGATGCCGTTGACTCTGGACTGCTGACCCGACCACCAATCTCGGGCTACCCGGAATCGGAATCGGTGGAAATGGTTGCGTTGAGGTTTCACCAGTACCAGGTTGTGGGTAGGGCTCTTCCTACGGAAAACGATGAGCACCCAAAGATGTACCGCATGAAACTCTGGGCCACCAATGAGGTCCGTGCTAAATCCAAGTTCTGGTACTTCTTGAGAAAGTTGAAGAAAGTGAAGAAAAGCAATGGGCTAGTGCTAGCCATCAATGAGATTTTTGAGAAAAACCCAACCAAGATTAAGAACTATGGAATTTGGCTGCGTTATCAGAGTCGTACTGGCTACCACAATATGTACAAGGAATACCGAGATACTACTCTAAATGGTGCTGTTGAGCAAATGTACAACGAAATGGCTTCTCGTCACAGGGTGAGGCATCCATGCATTCAGATCATTAAGACTGCAACTGTTCCCGCTAAGCTGTGCAAAAGGGAGAGCACCAAGCAGTTTCACGACTCGAAAATCAAGTTCCCCTTGATGTTCAAGAAGGTTAGGCCCCCAACTAGGAAGCTGAAGACAACATACAAGGCATCCAAGCCCAACCTGTTTATGTGA 2316 0.4309 MVLKVPLIVVILVICSCAVEAISGNHNLNKNGSSLAAIKFPNHPSFNAVSSSGDTDCSLSNSEQLGHSGPTMTSNEEIDDDDDGEGEEGEAFLAANPHKQSVKLHLKHRSASKDAEPKKSVIDFTVRDLTRIQTLHRRVIEKKNQNTVSRLQEKKSKPVIAPAASPEYFGSGVSSQLVATLESGVSLGSGEYFMDVFVGTPPKHFSLILDTGSDLNWIQCVPCMACFEQSGPYYDPKDSSSFKNISCHDPRCQLVSSPDPPKPCKNANQTCPYFYWYGDSSNTTGDFALETFTVNLTTPSGKSELNRVENVMFGCGHWNRGLFHGAAGLLGLGRGPLSFASQLQSLYGHSFSYCLVDRNSNASVSSKLIFGEDKELLGHPNLNFTSFVGGKENPVDTFYYVQIKSVMVDDEVLKIPEDTWHLTAEGGGGTIIDSGTTLTYFADPAYEIIKEAFVKKIRGYDLVEGFPPLKPCYNVSGIEKMELPDFGILFADGAVWNFPVENYFIQIEPDVVCLAILGTPRSALSIIGNYQQQNFHLLYDTKKSRLGYAPMKSSKEVPIQISKRVDCGNEDAVDSGLLTRPPISGYPESESVEMVALRFHQYQVVGRALPTENDEHPKMYRMKLWATNEVRAKSKFWYFLRKLKKVKKSNGLVLAINEIFEKNPTKIKNYGIWLRYQSRTGYHNMYKEYRDTTLNGAVEQMYNEMASRHRVRHPCIQIIKTATVPAKLCKRESTKQFHDSKIKFPLMFKKVRPPTRKLKTTYKASKPNLFM* 772
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr9g1672 771 MobiDBLite consensus disorder prediction 49 73 - -
Apr9g1672 771 MobiDBLite consensus disorder prediction 49 88 - -
Apr9g1672 771 PRINTS Pepsin (A1) aspartic protease family signature 198 218 IPR001461 GO:0004190|GO:0006508
Apr9g1672 771 PRINTS Pepsin (A1) aspartic protease family signature 430 441 IPR001461 GO:0004190|GO:0006508
Apr9g1672 771 PRINTS Pepsin (A1) aspartic protease family signature 525 540 IPR001461 GO:0004190|GO:0006508
Apr9g1672 771 SUPERFAMILY RplX-like 664 739 - -
Apr9g1672 771 CDD pepsin_A_like_plant 191 552 IPR034161 -
Apr9g1672 771 Hamap 50S ribosomal protein L18Ae [rpl18a]. 599 662 IPR028877 -
Apr9g1672 771 PANTHER ASPARTYL PROTEASES 8 554 IPR001461 GO:0004190|GO:0006508
Apr9g1672 771 ProSiteProfiles Prokaryotic membrane lipoprotein lipid attachment site profile. 1 17 - -
Apr9g1672 771 Gene3D - 665 740 - -
Apr9g1672 771 Gene3D - 589 664 - -
Apr9g1672 771 ProSiteProfiles Peptidase family A1 domain profile. 192 549 IPR033121 -
Apr9g1672 771 SUPERFAMILY Acid proteases 184 553 IPR021109 -
Apr9g1672 771 ProSitePatterns Eukaryotic and viral aspartyl proteases active site. 207 218 IPR001969 GO:0004190|GO:0006508
Apr9g1672 771 Pfam Ribosomal proteins 50S-L18Ae/60S-L20/60S-L18A 600 721 IPR023573 GO:0003735|GO:0005840|GO:0006412
Apr9g1672 771 Pfam Xylanase inhibitor C-terminal 399 549 IPR032799 -
Apr9g1672 771 Gene3D Acid Proteases 373 558 IPR021109 -
Apr9g1672 771 PANTHER ASPARTYL PROTEASE FAMILY PROTEIN 2-LIKE 8 554 - -
Apr9g1672 771 Pfam Xylanase inhibitor N-terminal 192 371 IPR032861 -
Apr9g1672 771 Gene3D Acid Proteases 172 372 IPR021109 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr9g1672 Apr-Chr9 26011762 26017876 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr9g1672 593 771 Cytoplasmic Ribosomal Protein Gene Family AT2G34480 89.385 1.29e-113 341
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr9g1672 K22683 - zju:107416111 1115.14
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr9g1672 9 26011762 26017876 Apr9g1672 9 26011762 26017876 ECH
Apr2g0073 2 1126521 1129006 Apr9g1672 9 26011762 26017876 PCT