Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr9g1667 ATGGATGTGGCCAAGTTACAAAACTCTGATGAGGACAAAAAAGAAGATGAAGTTGTGCTTCCTGGGTTTAGATTCCATCCAACTGATGAAGAGCTTGTTGGGTTTTATCTGAGGCGAAAGGTTGACAAAAAGCCTCTAAAAATTGAACTCATCAAACAGATTGACATCTACAAATATGATCCATGGGATCTTCCAAAAGTGAGTTCTGTGGGGGAGAAGGAATGGTATTTCTTTTGCATAAGAGGGAGAAAATACAGGAACAGCATAAGGCCTAATAGGGTTACAGGATCTGGATTTTGGAAAGCCACAGGGATTGACAAGCCTATATACTGTGTTAAAGAACCACATGAATGCATTGGCCTCAAGAAATCATTGGTCTATTACCGCGGAAGTGCTGGGAAAGGCACCAAAACTGATTGGATGATGCATGAGTTTCGCCTTCCACCCAATGGAAAAACTAGCAATAATAATCCACAAGCTAATGATGCCAATGATGTTCAAGAAGCTGAAGTGTGGACACTATGCCGAATATTCAAACGAGTCCCATCTTACAAAAAATACACACCAAATTTGAAAGACTCAACACCACTGACAAGGCCAAACCCCACTAACTCTTCAAGTTCCAAAACATGCAGCTTAGAATCTGACAACAGCAAGCCGTACTTGACTTTCACAGACTCAACACTCATTCATCAAAGTGAAACCAGACCTGTTTTTGAAGAGAAGAACCACTTTTTTCTTGGTCAGTTAGGCAATGTTGTAGCTCAGGCTCCAACATCATTGTCTCACTCAAGTTTTTGGAATCAGAATATGGATGATGCATTTGAAAATGAGAACTGGGATGATCTCAGATCTGTGGTTCAGTTTGCCGTTGATCCATCTAAGGTTTATTATGATTGTAAAGAATTTAATAGATTTTAA 921 0.3974 MDVAKLQNSDEDKKEDEVVLPGFRFHPTDEELVGFYLRRKVDKKPLKIELIKQIDIYKYDPWDLPKVSSVGEKEWYFFCIRGRKYRNSIRPNRVTGSGFWKATGIDKPIYCVKEPHECIGLKKSLVYYRGSAGKGTKTDWMMHEFRLPPNGKTSNNNPQANDANDVQEAEVWTLCRIFKRVPSYKKYTPNLKDSTPLTRPNPTNSSSSKTCSLESDNSKPYLTFTDSTLIHQSETRPVFEEKNHFFLGQLGNVVAQAPTSLSHSSFWNQNMDDAFENENWDDLRSVVQFAVDPSKVYYDCKEFNRF* 307
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr9g1667 306 MobiDBLite consensus disorder prediction 189 215 - -
Apr9g1667 306 Pfam No apical meristem (NAM) protein 21 147 IPR003441 GO:0003677|GO:0006355
Apr9g1667 306 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 3 305 - -
Apr9g1667 306 PANTHER - 3 305 - -
Apr9g1667 306 Gene3D NAC domain 28 183 IPR036093 GO:0003677|GO:0006355
Apr9g1667 306 ProSiteProfiles NAC domain profile. 19 180 IPR003441 GO:0003677|GO:0006355
Apr9g1667 306 SUPERFAMILY NAC domain 18 179 IPR036093 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr9g1667 Apr-Chr9 25972858 25975959 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr9g1667 7 181 NAC Transcription Factor Family AT5G39820 59.788 5.27e-77 236
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Apr9g1667 NAM 2.9e-36 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr9g1667 - - gsj:114384349 515.383
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr9g1667 9 25972858 25975959 Apr9g1667 9 25972858 25975959 ECH
Apr2g0071 2 1082243 1087023 Apr9g1667 9 25972858 25975959 PCT