Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr9g1661 ATGGATAACTCAAATGAAGCATCATCATCCTTGAGCTTTGTATCATCTCAATTGTCACATGGTTCTAGCAATCACAACGTGTCTTCCTCCACCAGCAGTGAGCAAGGGGCAAGTATTGAAATTTTGAGTCTGGGTAAGCTCAGTGGAAGCCTTGAGAAGTTATTGATTGATGCTGAGTATGATTATAGTGATGCTGAGATTTTTGTTGAAGGCAAAACTGTGGGTATTCATCGCTGTATATTGGCATCACGTAGTCCATTTTTTCATGAGTTTTTTAAGAAAGGAAAAGATGGATCAGTGAAAGAAGGAAAGCCAAGGTATCTCATGTCAGAATTGGTGCCTTATGGCACAGTTGGATGTGAAGCTTTCAACGTTTTCTTGCATTATTTGTATACTGGAAGGCTAAAGGCTTCACCACCAGAAGTGACAACATGTGTTGATGAAACATGTATCCATGATGCATGCCGCCCTGCTATCAATTATGCTTTGGAACTTATGTATGCTTCTACCACTTTTCAGATGAAAGAGCTGGTTTTACTTTTTCAGCGGCATCTCCTAAATTTTGTTGAGAAGGCTCTTGTAGAGGATGTCATTCCTATTCTTATGGCTGCCTTTCACTGCCAACTAGACCAGCTTCTATCTCGGTGCATTCAAAGAGTAGCAAGGTCTGATTTTGACAATATTTCTTTGGAAAAAGAGCTCCCTTGTGATATTGTGACTGAAGTCAAATCCCTCAGAGTCCAATCTCAACCAGAATCCACACCTAATGCAATGGAAGTGGAGCCTTTGAATGAAAAGAGTATCAGGAGAATCCATAAGGCATTGGACTCTGATGATGTTGAGCTACTGAAGCTTCTTTTAAATGAGTCTAGTGTCACTCTTGATGATGCATATGCTCTGCACTATGCTTGTGCCTATAGTGATTCTAAGATTGTTCAAGAAGTTCTTAGTCTTGGCTTGGCTGATGTTCTTCATAGAAATTCAAGAGGGTACACGGTTCTTCATGTGGCTGCAAGAAGAAAGGATCCATCCATTTTGGTAGCACTATTGAAAAAAGGGGCCTGTGCATCAGATACCACTCCAGATGGACAAACTGCTCTTGCAATTTGTCAAAGGTTGACAAGAAGAAAGGATTATCACGTGAAAACAATGCAATTTGAGGAATCTAACAAGGATAGGCTCTGTGTTGATGTCCTGGAGAGAGAGATGAGAAATTGTTCTAATATTGTGAAGATGTCTGTTTCATCACAGTTAAGTGCTGATGATTTGCGCATGCAACTGGATTACCTTGAAAATAGAGTTGCAGTTGCTAGGATGATGTTTCCTGCTGAGGCTAGGGTAGCCATTGAGAATGCTGAGGCAGATTCATCATCACTTTATGCAAGCTCATCATCTTTGAAGGCCTCAAATGGCAATCTAAAAGTAGATTTAAATGAAACTCCTGCTGATCGGACCAGAAAACTTCAGCTAAGATTGAATTCACTTATTAAAACAGTTGAGAATGGTAGGCGCTTCTTTCCACATTGCTCTGAGGTGCTTGATAACTTTCTAGATGACGATATGCCAGATGTTTTCTTCTTAGAAAAGGGCTCTGAAGAAGAGCAAAGAATGAAGAAAGCACGGTTCATGGAACTTAAAGATGATGTGCAAAAGGCATTTCACAAGGATATGGCTGTAAACAACCATTCAGGTTTTTCTTCTTCTATGTCTCCCTCATCATCCTCAACACGTAGGGAAGGTCATAACCACAGAGTGAGGAGAAAATGA 1767 0.4041 MDNSNEASSSLSFVSSQLSHGSSNHNVSSSTSSEQGASIEILSLGKLSGSLEKLLIDAEYDYSDAEIFVEGKTVGIHRCILASRSPFFHEFFKKGKDGSVKEGKPRYLMSELVPYGTVGCEAFNVFLHYLYTGRLKASPPEVTTCVDETCIHDACRPAINYALELMYASTTFQMKELVLLFQRHLLNFVEKALVEDVIPILMAAFHCQLDQLLSRCIQRVARSDFDNISLEKELPCDIVTEVKSLRVQSQPESTPNAMEVEPLNEKSIRRIHKALDSDDVELLKLLLNESSVTLDDAYALHYACAYSDSKIVQEVLSLGLADVLHRNSRGYTVLHVAARRKDPSILVALLKKGACASDTTPDGQTALAICQRLTRRKDYHVKTMQFEESNKDRLCVDVLEREMRNCSNIVKMSVSSQLSADDLRMQLDYLENRVAVARMMFPAEARVAIENAEADSSSLYASSSSLKASNGNLKVDLNETPADRTRKLQLRLNSLIKTVENGRRFFPHCSEVLDNFLDDDMPDVFFLEKGSEEEQRMKKARFMELKDDVQKAFHKDMAVNNHSGFSSSMSPSSSSTRREGHNHRVRRK* 589
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr9g1661 588 ProSiteProfiles BTB domain profile. 63 139 IPR000210 GO:0005515
Apr9g1661 588 SMART BTB_4 63 189 IPR000210 GO:0005515
Apr9g1661 588 Pfam Domain of unknown function (DUF3420) 224 272 IPR024228 -
Apr9g1661 588 SUPERFAMILY POZ domain 60 187 IPR011333 -
Apr9g1661 588 Pfam Ankyrin repeats (many copies) 319 369 IPR002110 GO:0005515
Apr9g1661 588 MobiDBLite consensus disorder prediction 560 576 - -
Apr9g1661 588 CDD BTB_POZ_NPR_plant 45 189 - -
Apr9g1661 588 Gene3D - 263 403 IPR036770 -
Apr9g1661 588 PANTHER REGULATORY PROTEIN, PUTATIVE-RELATED 1 586 - -
Apr9g1661 588 SMART ANK_2a 266 294 IPR002110 GO:0005515
Apr9g1661 588 SMART ANK_2a 295 325 IPR002110 GO:0005515
Apr9g1661 588 SMART ANK_2a 329 358 IPR002110 GO:0005515
Apr9g1661 588 Gene3D Potassium Channel Kv1.1; Chain A 38 221 IPR011333 -
Apr9g1661 588 ProSiteProfiles Ankyrin repeat profile. 329 354 IPR002110 GO:0005515
Apr9g1661 588 SUPERFAMILY Ankyrin repeat 259 372 IPR036770 -
Apr9g1661 588 Pfam NPR1/NIM1 like defence protein C terminal 371 571 IPR021094 -
Apr9g1661 588 Pfam BTB/POZ domain 60 178 IPR000210 GO:0005515
Apr9g1661 588 MobiDBLite consensus disorder prediction 556 588 - -
Apr9g1661 588 ProSiteProfiles Ankyrin repeat region circular profile. 329 354 - -
Apr9g1661 588 PANTHER REGULATORY PROTEIN NPR3 1 586 IPR044292 GO:0009862|GO:2000022|GO:2000031
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr9g1661 Apr-Chr9 25927650 25931894 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR TRAF Apr9g1661 NPR1_like_C 5.9e-76 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr9g1661 K14508 - gmx:100816582 909.827