Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr9g1654 ATGAATAGCAATGTTCCAGGTTGGGATTTTGAGAGTGATACTTGTCTCACCAACCAAAAGAAGCTCATAGGGCTGGACCAAGAATTTGTAGAGCTCCTATGGCAAAATGGACAGGTAGTTATGCACAGCCAGACACATAGGAAACCAGTTGGGAATTCATCTAACTTGAGACAGGTTCAGAAAAGTGATCAATCAACATTAACTAGTGGGACATGTGGGAACTCGAGTAACTTGACTCAAGATGAGACATACCCATGGATCCACTACCCACTTGAGGACCCATTGGAGCAACAATTCTATTCAAACCTTTCATCTGAACTACCATCCTGTGAAGTTGAGACTTTCAAGCCAATTGGACAATTGGAAGGAGCAAAGTTTGACAAATTTGTTGCCTCTAGTGCCCCCCATGCAACTTCAAGTTCACGACCACCTAATATGAAACCCTCCTATGTTCAGGGATTCCGAGGGAATCCTATACCTGATCCAAGGTTTCATGTTCCTGATTCATCTCAGAAAATCAACGACTTTGGAGGATCAAGAAAGGTGCTAAATTTTTCTCACTTTTCAGCACCCCGTTATGTTTCTTCATCATGTGGTGGTGCACAGTTTAGAGAAAATGTTACTTCTAATGTGTCACAAAGTGAGGCCAGAGAGTACTCAGTGATGACAATCGGTTCAAGTCACTGTGGCAGCAATCACATCCCTCAGGACCAAGATGTAAGCAGGATATCAAGCAATGGAATTTGGGCAACTACTACTACTACTGCTACTACTATATCTCATGAGCCTGAAGCTGTCAGAGATTGTATCCAAAGAACAGTTCCTAGGAGTGATCAAGGAAAATCAGAGAAGATTGAACCAACTGTGACTTCATCTTCTGGTGGTTCAGGTGGTACTAGTATTGAAAGAACTTGTTCCCTATCATCAACAAGAAACCAAGGCCAAAAGAGAAAAGACCCAGATGTTGAAGCACAAGAGGAACAAAGTGAGGCCACAGAACTTAAATCAGGTGATAGAAACAAAGCATCTCAGCGGATAGGGTCTTCCATAAGAAACCGAGCAGCTGAAGTGCATAATCTATCAGAAAGGAGGAGAAGAGATAGGATCAATGAGAAGATGAGGGCATTGCAGCAACTCATACCTAACAGTAACAAGACAGACAAAGCATCAATGTTAGAAGAGGCAATAGAGTACTTGAAATCACTTCAGTTACAGCTTCAGGTAATGTGGATGGGAGCTGGCATGAGCCCAGTGATGTTTCCAGGAATTCAGCATTATATGTCACAAATGAATATGGGAATGGCTGCACCTTCTTTGCCTTCAATTCACAATCCAATGCAATTACCAAAAGTCCCAAATGATCAATCCATGTCTATGACTCAGATACCAAACCAGACTTTGATGTGCCAAAATCCAGTTTTGGGTGCTTTTAGTTACCAAAATCTGATGCAAAACCCTTACCTTTCAGAGCAATATGCACGTTACATGGGTTATCATCTTATGCAAAGTGCCTCCCAGCCAATGAATGTGTTTAGATATGGTTCCCAGGCAGTGCAACATAGTCAAACAATTATTGCACCCAGCAATAATAATAATGGACCCATGAATGGAACAGCTAATATTGATGATGCGGTTCTTGCACCTTTAACTGAATAG 1656 0.4179 MNSNVPGWDFESDTCLTNQKKLIGLDQEFVELLWQNGQVVMHSQTHRKPVGNSSNLRQVQKSDQSTLTSGTCGNSSNLTQDETYPWIHYPLEDPLEQQFYSNLSSELPSCEVETFKPIGQLEGAKFDKFVASSAPHATSSSRPPNMKPSYVQGFRGNPIPDPRFHVPDSSQKINDFGGSRKVLNFSHFSAPRYVSSSCGGAQFRENVTSNVSQSEAREYSVMTIGSSHCGSNHIPQDQDVSRISSNGIWATTTTTATTISHEPEAVRDCIQRTVPRSDQGKSEKIEPTVTSSSGGSGGTSIERTCSLSSTRNQGQKRKDPDVEAQEEQSEATELKSGDRNKASQRIGSSIRNRAAEVHNLSERRRRDRINEKMRALQQLIPNSNKTDKASMLEEAIEYLKSLQLQLQVMWMGAGMSPVMFPGIQHYMSQMNMGMAAPSLPSIHNPMQLPKVPNDQSMSMTQIPNQTLMCQNPVLGAFSYQNLMQNPYLSEQYARYMGYHLMQSASQPMNVFRYGSQAVQHSQTIIAPSNNNNGPMNGTANIDDAVLAPLTE* 552
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr9g1654 551 MobiDBLite consensus disorder prediction 44 76 - -
Apr9g1654 551 Gene3D - 350 409 IPR036638 GO:0046983
Apr9g1654 551 PANTHER TRANSCRIPTION FACTOR PIF1-RELATED 1 531 IPR031066 -
Apr9g1654 551 MobiDBLite consensus disorder prediction 284 313 - -
Apr9g1654 551 CDD bHLH_AtPIF_like 353 415 - -
Apr9g1654 551 PANTHER TRANSCRIPTION FACTOR PIF5 1 531 - -
Apr9g1654 551 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 353 402 IPR011598 GO:0046983
Apr9g1654 551 MobiDBLite consensus disorder prediction 254 349 - -
Apr9g1654 551 MobiDBLite consensus disorder prediction 314 340 - -
Apr9g1654 551 Pfam Helix-loop-helix DNA-binding domain 357 403 IPR011598 GO:0046983
Apr9g1654 551 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 353 414 IPR036638 GO:0046983
Apr9g1654 551 SMART finulus 359 408 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr9g1654 Apr-Chr9 25864606 25868279 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr9g1654 7 522 Basic Helix-Loop-Helix Transcription Factor Gene Family AT2G43010 35.754 1.04e-55 192
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Apr9g1654 HLH 7.1e-15 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr9g1654 K16189 - gmx:100811777 814.298
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr9g1654 9 25864606 25868279 Apr9g1654 9 25864606 25868279 ECH
Apr2g0068 2 1051272 1056363 Apr9g1654 9 25864606 25868279 PCT
Apr9g1654 9 25864606 25868279 Apr9g1654 9 25864606 25868279 PCT