Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr9g1648 ATGAAGCTTTCTTCTTCTGGATTTAATCAACCGGCTGAAGAAGAAGGGGAGAAAAAATGTTTGAATTCTGAACTTTGGCATGCATGTGCTGGCCCTCTGGTTTCTCTGCCTCCTGTTGGAAGTCGTGTAGTCTACTTTCCCCAAGGTCACAGTGAGCAGGTTGCTGCTTCAACCAACAGAGAAGTAGATGCACATATTCCTAATTACCCAAACTTGCCGCCACAACTTATCTGTCAGCTTCACAATGTGACGATGCATGCAGATGCTGAAACAGATGAAGTCTATGCTCAAATGACTCTGCAGCCTCTAAGTCCACAAGAGCAAAAGGAGGTATATCTGCTGCCTGCAGAATTGGGTGCTCCCAGCAAACAACCAACCAACTACTTCTGTAAAACATTAACTGCAAGTGATACAAGCACTCATGGAGGATTTTCTGTTCCTCGAAGAGCAGCTGAAAAAGTCTTCCCTCCCCTTGATTACACCCAGCAGCCTCCTGCTCAAGAACTAATTGCTAGAGACCTCCATGATAATGAGTGGAAATTCAGACACATATTTCGAGGTCAGCCCAAAAGGCATCTTCTTACTACTGGGTGGAGTGTCTTTGTCAGTGCTAAGAGGCTTGTTGCTGGTGATTCAGTCCTTTTCATCTGGAATGAAAAAAATCAATTACTCTTGGGCATACGGCGAGCAAATCGTCCACAGACTATCATGCCGTCATCAGTTCTGTCAAGTGATAGCATGCACATTGGTCTTCTTGCTGCTGCAGCTCATGCAGCTGCTACAAACAGCCGCTTTACTATATTCTATAATCCTAGGGCAAGCCCATCTGAATTTGTCATTCCTTTGGCCAAGTACGTCAAAGCTGTGTATCATACGCGAGTTTCTGTTGGCATGCGATTTAGGATGCTCTTTGAGACAGAAGAATCAAGTGTCCGTCGATACATGGGTACCATAACAGGTATTAGTGATTTAGATCCGGTTCGCTGGCCAAATTCACACTGGCGATCTGTGAAGGTTGGCTGGGATGAGTCCACTGCAGGGGAGAGGCAGCCAAGAGTTTCCTTGTGGGAGATTGAACCTTTGACAACATTCCCAATGTATCCATCTCCATTCCCCTTGAGGTTGAGGCGCCCTTGGCCTTCTGGCCTGCCTTCTTTATATGGTCTCAAGGATGGTGACATGAACATTGGTTCTCCATTCATGTGGCTTCAAAGTGGGCTTGGGGATCAGGGAATGCAATCTTTGAGCTTCCAGGGGCTTGGTGTTACACCATGGATGCAACCTAGACTTGATGCTTCTATACCAGGCCTTCAACCAGATTTATACCAAGCAATGGCCTCTGCTGCATTTCAGGAGATGAGAACAATGGATCCTGCAAAATCTTCCCAATCTCTGTTGCAGTTTCAGCAGACTTCCAATGTTCCCAGTGCTCATACTTCTGAGGTACAGAGGCAAGTATTACCACAGTCTCAGCCTCAAAACACCCTTCTACACAGTTTTCCAGAAAACCAGGTGCCTGCTCAGTCACAACTTCTGCAACAGCAGTTGCATCGTTACCACCCATATAATGATCAGCGACAACAGCAGCAGCAACTTAAAAACTTACCTGTTCAGCAGCAGTTACCAAATGTCATTTCTCCTTTATCTAATTTTGCGTCAGGTACCCAGTCTCAGTCTCCACCCATGCAAGCCCTAGGTTCACATTGCCAGCAGCAGAGCTTTCCTGAGCCTATCCGGAATCATATTTCTGGTTCTGATGTTTCACCTATCCAGAGTCTACTGAGTTCATTCTCCCAGGATGGAAGCTCCCAGTTACATAATTTGAATGGATCCAATTCTGTGATATCTTCTGCAGCCATACTACCCAAGCAAATAGCTGTTGAACCTCAGCTTGCATCTGCTGCTGCTCATGGCATACTGCCTCAGGTGGAAAATTTGGGGGCATCACAATCAAATGTGTCTGAACTTACTGCTTTGCCTCCATTTCCAGGAAGAGAACATTCTGCATACCATGGTGCTGCTGATCCTCAGAGCAATCTTTTATTTGGGATTAACATTGATCCTTCTTCTCTTATGCTGCAAAATGGCATGTCAAACCTGAGAAATATAGGCAACGTGAATGATTCATTGTCATTGCCATTTCCTGCTTCAAATTGTGGTGGTGCTACGGGCACTGATTTTCCTTTAAGTTCAAACATGACCACTTCAAGTTGTGTGGATGAATCAGGGTTCTTGCAGTCTTCTGAAAATGTAGACCAAGCAAATACACCAACTGGAACCTTTGTTAAGGTTCACAAGTCAGGGTCCTTTGGAAGGTCACTGGACATTTCTAAGTTCAGCAGCTATGATGAGCTGCGCAGTGAGCTTGCTCGCATGTTTGGCCTTGAAGGTCAACTAGAGGACCCTAAGACTCAGAGATCAGGCTGGCAGCTTGTATTTGTTGACCGGGAGAATGATGTTCTTCTTCTTGGTGATGATCCTTGGCAGGAGTTTGTGAACAATGTGTGGCACATCAAGATACTGTCTCCACTTGAAGTGCAACAAATGGGCAAAGGTCTTAGTCCTTCAACTTCTGCCCCAGGTCACAAACTTCCTACTGCAGGCAACTCTTGTGATAATTATGTGAATCAACAAGAGTTGAGAAGTCCGAGAAGTGGCATGGCATCAATGGGGTCTTTTCACTACTAG 2688 0.455 MKLSSSGFNQPAEEEGEKKCLNSELWHACAGPLVSLPPVGSRVVYFPQGHSEQVAASTNREVDAHIPNYPNLPPQLICQLHNVTMHADAETDEVYAQMTLQPLSPQEQKEVYLLPAELGAPSKQPTNYFCKTLTASDTSTHGGFSVPRRAAEKVFPPLDYTQQPPAQELIARDLHDNEWKFRHIFRGQPKRHLLTTGWSVFVSAKRLVAGDSVLFIWNEKNQLLLGIRRANRPQTIMPSSVLSSDSMHIGLLAAAAHAAATNSRFTIFYNPRASPSEFVIPLAKYVKAVYHTRVSVGMRFRMLFETEESSVRRYMGTITGISDLDPVRWPNSHWRSVKVGWDESTAGERQPRVSLWEIEPLTTFPMYPSPFPLRLRRPWPSGLPSLYGLKDGDMNIGSPFMWLQSGLGDQGMQSLSFQGLGVTPWMQPRLDASIPGLQPDLYQAMASAAFQEMRTMDPAKSSQSLLQFQQTSNVPSAHTSEVQRQVLPQSQPQNTLLHSFPENQVPAQSQLLQQQLHRYHPYNDQRQQQQQLKNLPVQQQLPNVISPLSNFASGTQSQSPPMQALGSHCQQQSFPEPIRNHISGSDVSPIQSLLSSFSQDGSSQLHNLNGSNSVISSAAILPKQIAVEPQLASAAAHGILPQVENLGASQSNVSELTALPPFPGREHSAYHGAADPQSNLLFGINIDPSSLMLQNGMSNLRNIGNVNDSLSLPFPASNCGGATGTDFPLSSNMTTSSCVDESGFLQSSENVDQANTPTGTFVKVHKSGSFGRSLDISKFSSYDELRSELARMFGLEGQLEDPKTQRSGWQLVFVDRENDVLLLGDDPWQEFVNNVWHIKILSPLEVQQMGKGLSPSTSAPGHKLPTAGNSCDNYVNQQELRSPRSGMASMGSFHY* 896
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr9g1648 895 Pfam B3 DNA binding domain 129 230 IPR003340 GO:0003677
Apr9g1648 895 MobiDBLite consensus disorder prediction 461 486 - -
Apr9g1648 895 ProSiteProfiles PB1 domain profile. 759 846 IPR000270 GO:0005515
Apr9g1648 895 Gene3D - 127 230 IPR015300 -
Apr9g1648 895 Pfam Auxin response factor 255 338 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Apr9g1648 895 CDD B3_DNA 128 229 IPR003340 GO:0003677
Apr9g1648 895 SUPERFAMILY CAD & PB1 domains 752 835 - -
Apr9g1648 895 MobiDBLite consensus disorder prediction 850 873 - -
Apr9g1648 895 SUPERFAMILY DNA-binding pseudobarrel domain 114 258 IPR015300 -
Apr9g1648 895 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 1 871 IPR044835 GO:0003677|GO:0006355|GO:0009725
Apr9g1648 895 Pfam AUX/IAA family 748 843 IPR033389 -
Apr9g1648 895 Gene3D - 755 850 - -
Apr9g1648 895 MobiDBLite consensus disorder prediction 547 582 - -
Apr9g1648 895 ProSiteProfiles B3 DNA-binding domain profile. 129 231 IPR003340 GO:0003677
Apr9g1648 895 SMART B3_2 129 231 IPR003340 GO:0003677
Apr9g1648 895 Gene3D - 293 365 - -
Apr9g1648 895 PANTHER AUXIN RESPONSE FACTOR 6 1 871 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr9g1648 Apr-Chr9 25818228 25826158 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr9g1648 1 486 B3 DNA Binding Superfamily AT1G30330 84.082 0.0 833
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Apr9g1648 AUX_IAA 3.5e-09 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr9g1648 - - gmx:100810798 1654.42
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr9g1648 9 25818228 25826158 Apr9g1648 9 25818228 25826158 ECH