Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr9g1644 ATGTTAACTGCGATTCTCAGAAGAACTTGTTCCACTCTTTCGCGGCGCACTTTTCCCGCCGCCATCATCTCCGCCTCCGCCGCCGTCGAGCCCCGGCAACTCTCCACCGCCTTCAATTCGAGAACCTTCCACTCGAAACCATCCTTGAATTTCTACTCCTCACTGTCTCATCGCGCAGAATATGCAGTGGACGTTTTCCCACACGAAGAAGGGTCCAAAGGAAACGCCGACGAAGGTCTCGAGATCGCGAAGCTTGGGATTTCTCAGGATATTGTTTCTGCTTTGGCTAAGAAAGGCATCACCAAGCTTTTCCCCATTCAGAGGGCTGTGCTGGAACCTGCTATGCAAGGTCGTGATATGATCGGTCGAGCTAGAACAGGAACTGGGAAGACTCTTGCATTTGGGATACCCATCATGGATAAGATCATTCAGTTTAATGCTAAGCATGGGCGAGGCAGGGATCCTCTAGCTTTGGTTTTGGCTCCAACTAGAGAACTTGCACGACAGGTTGAAAAGGAGTTCTATGAGGCGGCACCTAACTTAGACACTATTTGTGTTTATGGGGGTACACCCATCTCTAAACAAATGAGGCAGCTTGATTATGGTGTTGATATTGCAGTGGGGACGCCTGGTCGAATTATTGACCTTCTCAACAGAGGTGCTCTAAATTTGAAGGAAGTTCAATTTGTTGTTCTTGATGAAGCTGATCAGATGCTTCAAGTGGGTTTTCAGGAGGATGTGGAGAAGATCTTGGAGAGGTTGCCCCCAAATCGTCAGACTCTGATGTTCTCTGCTACAATGCCATCTTGGATAAAGCAGATTACACGCAACTACCTAAAAAATCCCCTGACCATTGATCTTGTTGGAGATTCTGATCAGAAGTTAGCTGATGGGATTGCACTGTATTCAATTGCAACTGATATGTATGTTAAAGCAGGAGTTCTTGCACCTCTAATAACAGAACATGCCAAGGGAGGAAAGTGTATTGTTTTCACTCAAACAAAACGTGATGCGGATCGATTATCATATACCATGGCTAAAAGTCTTCAATGTGAAGCTTTGCATGGAGATATATCACAAGCTCAGAGGGAAAGAACTCTTGCTGGTTTCAGGAGTGGCCATTTTAATGTTTTAATCGCAACCGATGTTGCTTCACGTGGGCTTGATATACCTAATGTTGATCTTATAATACATTATGATCTTCCCAATTCCTCAGAGATATTTGTTCACCGATCTGGACGAACAGGTCGTGCTGGTAAGAAAGGAACTGCCATTCTTGTGTATACTGAACATCAATCGAAGGCAGTTAGGCTGATTGAGCGTGATGTGGGCTGTAGATTTACAGAGCTACCAAGGATTGCCGTTGATAGTGGATCAGTGGACACATTTGGTGGCATGGGTGGTGGGCCATATGGTTCTTTTGGAGGTGCAAGGGATCGTCGATATGGAGATACAGGTTTTAGCCGTGGTTCTGGATTTGGCCGCACTGGGGGCTACAATAACTCTGGATCTGGCCGCTCTAGCTTTGGAAACTCTAGTGAAAGATTTGGTGGACCAAGTTCTAATCGGTTTGGTGGCCCTAGTTTTAATCAATCAGGAGGGGGATTTTCTGGTAATTCATCTGGTGAAATGAATAGATATGGTGGACCAAGCTCTGGTCGTTATGGCTCATCTGGTGGCTCTGGTTCAGGTCAATCAGGGAGTAGATCTGGTGGATCATCCGGTGGGTTTAAATTTGGTCGCTCAGATAATTTTGGGGTATTTGGTGGTTCAGATCATTCAGGTGGTTTTGGAGATCTTCGCTCAGGTCAGTATAGTGGCTTTGGTGATTCTCGTGGTAGTAAGTAG 1848 0.4583 MLTAILRRTCSTLSRRTFPAAIISASAAVEPRQLSTAFNSRTFHSKPSLNFYSSLSHRAEYAVDVFPHEEGSKGNADEGLEIAKLGISQDIVSALAKKGITKLFPIQRAVLEPAMQGRDMIGRARTGTGKTLAFGIPIMDKIIQFNAKHGRGRDPLALVLAPTRELARQVEKEFYEAAPNLDTICVYGGTPISKQMRQLDYGVDIAVGTPGRIIDLLNRGALNLKEVQFVVLDEADQMLQVGFQEDVEKILERLPPNRQTLMFSATMPSWIKQITRNYLKNPLTIDLVGDSDQKLADGIALYSIATDMYVKAGVLAPLITEHAKGGKCIVFTQTKRDADRLSYTMAKSLQCEALHGDISQAQRERTLAGFRSGHFNVLIATDVASRGLDIPNVDLIIHYDLPNSSEIFVHRSGRTGRAGKKGTAILVYTEHQSKAVRLIERDVGCRFTELPRIAVDSGSVDTFGGMGGGPYGSFGGARDRRYGDTGFSRGSGFGRTGGYNNSGSGRSSFGNSSERFGGPSSNRFGGPSFNQSGGGFSGNSSGEMNRYGGPSSGRYGSSGGSGSGQSGSRSGGSSGGFKFGRSDNFGVFGGSDHSGGFGDLRSGQYSGFGDSRGSK* 616
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr9g1644 615 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 314 458 IPR001650 -
Apr9g1644 615 SMART helicmild6 339 419 IPR001650 -
Apr9g1644 615 CDD DEADc 91 286 - -
Apr9g1644 615 Gene3D - 307 458 IPR027417 -
Apr9g1644 615 Pfam Helicase conserved C-terminal domain 316 419 IPR001650 -
Apr9g1644 615 Gene3D - 81 289 IPR027417 -
Apr9g1644 615 MobiDBLite consensus disorder prediction 494 577 - -
Apr9g1644 615 Pfam DEAD/DEAH box helicase 104 273 IPR011545 GO:0003676|GO:0005524
Apr9g1644 615 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 34 514 - -
Apr9g1644 615 SMART ultradead3 99 302 IPR014001 -
Apr9g1644 615 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 80 108 IPR014014 GO:0003724
Apr9g1644 615 MobiDBLite consensus disorder prediction 485 615 - -
Apr9g1644 615 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 154 440 IPR027417 -
Apr9g1644 615 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 111 285 IPR014001 -
Apr9g1644 615 CDD SF2_C_DEAD 311 428 - -
Apr9g1644 615 PANTHER DEAD-BOX ATP-DEPENDENT RNA HELICASE 53-LIKE 34 514 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr9g1644 Apr-Chr9 25788363 25792902 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr9g1644 85 451 Eukaryotic Initiation Factors Gene Family AT3G19760 33.962 2.68e-68 226
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr9g1644 - - gmx:100786041 889.026
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr9g1644 9 25788363 25792902 Apr9g1644 9 25788363 25792902 PCT