Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr9g1643 ATGGGAACTCCTACTCTAAGCTTTGTGCTCTTTAGTTTTTTCACCCTTTTGTGTTTCACTTGGCCGCCTTCTGTTTCTTCTCTTCCTATGTCTTTGAGAAGACAAGCTTCTATCTTGGTTTCTCTCAAACAAGATTTTGAAGCCAACACTTCTTTGAATGGCTGGGACATGTCTAACTACTTGTCTCTTTGCACTTGGGAAGGTATTCAATGTGACCAAAAGAACATGTCTGTGGTGTCACTAGATATATCCAACCTTAATGTTTCTGGGACACTTTCACCTTCCATCACAGGACTCAGGAACCTTCTGGAAAGGTTGAGGTTCCTCAACATATCTAACAACATGTTCAGTGGAGACGTGAGTTGGGAATTCTCTCAGTTGAAGGAGCTTGAATTGTTGGATGCTTATAACAATGAGTTCAATTGTTCACTCCCTCTTGGTGTCACTGAGCTAGCTAAGCTCAAGTACTTGAATTTTGGCGGGAACTTTTTCAATGGTGAAATTCCTCCAAGCTATGGAAACATGGTGCAGCTCAATTTTCTATCTCTTGCAGGGAATGATTTGAGAGGCTTCATACCAACTGAGTTTGGAAATCTCACCAACTTGTCTCAGCTTTTCTTGGGATATTACAATCAGTTTGATGGTGGAATACCACCTCAGTTTGGTAAGCTGGTTAATTTAACTCATCTTGACCTCGCAAACTGTGGCTTGAAAGGTCCAATTCCAGCTGAATTGGGCAACCTCATCAAACTTGACACTCTCTTCTTGCAAACTAACCAGCTCAGTGGTTCAATCCCTCCTCAACTAGGCAACCTGAGTAGCTTGATATGTCTTGATCTGTCAAACAATGAGTTAACAGGAGACATCCCAAATGAGTTCTCAGGCCTTCATCAGCTTACCCTCTTGAATTTATTCATGAACAGGTTGCATGGTGAAATTCCACCTTTCATTGCTGAGTTACCTAAGTTGGAAGTGCTCATGCTTTGGAGGAACAACTTCACAGGTGCCATTCCTTCAAAGCTTGGCCAGAATGGTAAATTGACTCAGCTTGACCTGTCAACAAATAAGCTCACAGGAATGCTTCCTAAATCTCTATGCTTTGGAAAGAGGCTGAGGATTTTGATCCTTCTCAACAATTTTCTGTTTGGATCTTTGCCTGCTGATCTTGGTGAATGCTACTCACTGCAAAGAGTTCGTTTGGGGCAGAACTATTTGACAGGATCAGTACCAAATGGTTTTCTTTATTTGCCTGAGTTATCCCTTTTGGAACTACAGAACAATTACCTTAGTGGTTGGCTTCCACAAGCAACAAGCACTGCACCCTCGAAGCTTGGACAGTTGAATCTATCAAACAACCGTTTATCTGGTTCTCTACCAACCTCTATTGGAAACTTTCCCAACTTGCAAATTCTGCTTCTTCATGGAAATAGAATCTCAGGAGAAATTCCCCCAGATATAGGGAGGTTGAAAAATATACTCAAGTTGGATATGAGTGTTAACAACTTTTCAGGCACTATTCCTCCTGAGATAGGTAACTGTTTGCTACTCACCTATTTAGATTTGAGCCAAAACCAACTATCAGGGCCTATCCCAATTCAGGTTTCTCAAATTCACATACTAAACTATCTCAATGTCTCATGGAACCACCTAAACCGAAGTCTTCCCAAGGAACTTGGGGCCATGAAGGGCTTAACTTCAGCAGATTTTTCTCACAATAATTTCTCTGGTTCAATACCAGAGGAGGGACAATTTTCAGTTTTTAATTCTACATCCTTTGTGGGAAATCCTCAGCTCTGTGGCTATGACTTGAATCCATGCAACCATCCTTCAAATGCAATGTTGGAGTCTCTGGGCAAAGGCAGTGCAAAACCAGGAGTTCCTGGGAAGTATAAGCTTCTTTTTGTGTTGGCACTATTAGGCTGTTCATTGGCATTTGCAATCTTGGCCTTTATCAAGAGCAGAAAGCAAAGGAGGTACCCCAGTTCATGGAAGCTCACAGCATTTCAGAAGCTGGAATATGGAAGTGAAGACATAGTGGGGTGCATAAAGGAAAGCAATGTCATAGGAAGGGGAGGAGCTGGTGTTGTATACTGTGGAAACATGCCAAATGGAGAACAAGTAGCTGTGAAGAAGCTGTTAGGAATCAACAAAGGCTGTTCTCATGATAATGGACTCTCTGCTGAAATAAGAACACTAGGTAGAATCAGACACAGGTACATTGTGAGGTTGCAAGCTTTTTGTTCAAATAGAGAGACCAATTTACTTGTTTATGAGTATATGCCAAATGGAAGCTTAGGTGAAGTCTTGCATGGGAAAAGGGGAGAGTTTCTCAAGTGGGATACTAGGCTGAAAATAGCAACAGAAGCTGCAAAAGGACTTTGTTATTTGCACCATGATTGTTCCCCTCTGATAATCCATAGAGATGTTAAGTCAAACAACATATTATTGAACTCTGAATTTGAGGCTCATGTTGCTGATTTTGGTCTTGCCAAGTTCTTGCAAGATACTGGAACATCAGAGTGCATGTCTTCAATTGCTGGTTCTTATGGCTATATTGCTCCAGAATATGCATACACATTGAAAGTTGATGAGAAAAGCGATGTGTATAGCTTTGGAGTGGTACTGCTAGAACTATTAACTGGGAGAAGGCCAGTAGGGGATTTTGGAGAAGAAGGAATAGACATTGTTCAATGGACCAAGCTGCAAACAAATTGGAGCAAAGACAAAGTAGTGAAGATCCTTGATTCTAGGCTATGTCACATTCCCTTAGAAGAAGCAAAGCAGGTATACTTTGTGGCCATGCTATGTGTTCAGGAACATAGTGTGGAGCGACCAACCATGAGGGAAGTGGTTGAAATGCTAGGACAAGCAAAGCAACCAAATACATTTCAAATGAAGTGA 2901 0.4147 MGTPTLSFVLFSFFTLLCFTWPPSVSSLPMSLRRQASILVSLKQDFEANTSLNGWDMSNYLSLCTWEGIQCDQKNMSVVSLDISNLNVSGTLSPSITGLRNLLERLRFLNISNNMFSGDVSWEFSQLKELELLDAYNNEFNCSLPLGVTELAKLKYLNFGGNFFNGEIPPSYGNMVQLNFLSLAGNDLRGFIPTEFGNLTNLSQLFLGYYNQFDGGIPPQFGKLVNLTHLDLANCGLKGPIPAELGNLIKLDTLFLQTNQLSGSIPPQLGNLSSLICLDLSNNELTGDIPNEFSGLHQLTLLNLFMNRLHGEIPPFIAELPKLEVLMLWRNNFTGAIPSKLGQNGKLTQLDLSTNKLTGMLPKSLCFGKRLRILILLNNFLFGSLPADLGECYSLQRVRLGQNYLTGSVPNGFLYLPELSLLELQNNYLSGWLPQATSTAPSKLGQLNLSNNRLSGSLPTSIGNFPNLQILLLHGNRISGEIPPDIGRLKNILKLDMSVNNFSGTIPPEIGNCLLLTYLDLSQNQLSGPIPIQVSQIHILNYLNVSWNHLNRSLPKELGAMKGLTSADFSHNNFSGSIPEEGQFSVFNSTSFVGNPQLCGYDLNPCNHPSNAMLESLGKGSAKPGVPGKYKLLFVLALLGCSLAFAILAFIKSRKQRRYPSSWKLTAFQKLEYGSEDIVGCIKESNVIGRGGAGVVYCGNMPNGEQVAVKKLLGINKGCSHDNGLSAEIRTLGRIRHRYIVRLQAFCSNRETNLLVYEYMPNGSLGEVLHGKRGEFLKWDTRLKIATEAAKGLCYLHHDCSPLIIHRDVKSNNILLNSEFEAHVADFGLAKFLQDTGTSECMSSIAGSYGYIAPEYAYTLKVDEKSDVYSFGVVLLELLTGRRPVGDFGEEGIDIVQWTKLQTNWSKDKVVKILDSRLCHIPLEEAKQVYFVAMLCVQEHSVERPTMREVVEMLGQAKQPNTFQMK* 967
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr9g1643 966 ProSitePatterns Serine/Threonine protein kinases active-site signature. 804 816 IPR008271 GO:0004672|GO:0006468
Apr9g1643 966 PANTHER UNNAMED PRODUCT 6 963 - -
Apr9g1643 966 SMART LRR_typ_2 224 248 IPR003591 -
Apr9g1643 966 SMART LRR_typ_2 465 489 IPR003591 -
Apr9g1643 966 SMART LRR_typ_2 272 295 IPR003591 -
Apr9g1643 966 SMART LRR_typ_2 416 439 IPR003591 -
Apr9g1643 966 SMART LRR_typ_2 175 198 IPR003591 -
Apr9g1643 966 SMART LRR_typ_2 320 344 IPR003591 -
Apr9g1643 966 SMART LRR_typ_2 537 561 IPR003591 -
Apr9g1643 966 SUPERFAMILY L domain-like 345 606 - -
Apr9g1643 966 Gene3D Transferase(Phosphotransferase) domain 1 760 965 - -
Apr9g1643 966 Pfam Leucine rich repeat 250 309 IPR001611 GO:0005515
Apr9g1643 966 Gene3D Ribonuclease Inhibitor 210 365 IPR032675 -
Apr9g1643 966 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE BAM3 6 963 - -
Apr9g1643 966 ProSiteProfiles Protein kinase domain profile. 682 962 IPR000719 GO:0004672|GO:0005524|GO:0006468
Apr9g1643 966 SMART serkin_6 682 954 IPR000719 GO:0004672|GO:0005524|GO:0006468
Apr9g1643 966 Pfam Leucine Rich Repeat 226 248 IPR001611 GO:0005515
Apr9g1643 966 Pfam Protein tyrosine and serine/threonine kinase 684 954 IPR001245 GO:0004672|GO:0006468
Apr9g1643 966 Gene3D Phosphorylase Kinase; domain 1 664 759 - -
Apr9g1643 966 Gene3D Ribonuclease Inhibitor 31 209 IPR032675 -
Apr9g1643 966 Gene3D Ribonuclease Inhibitor 366 607 IPR032675 -
Apr9g1643 966 SUPERFAMILY RNI-like 75 382 - -
Apr9g1643 966 SUPERFAMILY Protein kinase-like (PK-like) 676 954 IPR011009 -
Apr9g1643 966 Pfam Leucine rich repeat N-terminal domain 35 72 IPR013210 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr9g1643 Apr-Chr9 25779477 25783359 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr9g1643 25 956 Receptor kinase-like Gene Family AT5G65700 57.500 0.0 1072
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Apr9g1643 PK_Tyr_Ser-Thr 1.9e-44 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr9g1643 - - gmx:100816158 1697.56