Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr9g1642 ATGGCTTTCTTTAGGAACTTCTTAAATGATACAGTCTCTCATGGTGTCATGGAAGATAAAGGACAAGGACAGAATGCTAATGGAGTCCGTAGATCAATGGGTAATGAATGTACTGATGCAACTTCTAGCGAGAAAGAATTTGATATGAACATGGAGGCACAGTATGAGAGTGATGGTGAACCAGATGGTGCCAGTAGACTGCAAACTGAGGCAACAGCCGATGATGGAGATGATTTAAAAGAAGCAAACTTACAGACTACTGGTAGTAAAACTGCTATGGTTGGAAGGTGGGGTTCAACATTTTGGAAGGACTGCCGACCAATGTGCCCTCAAAATGGCTCTGAATCTGGGCAGGAATCGAAAAGTGGATCAGATTATAAAAATGCAGATGGGTCTGAAGATAATTCATTGGATGGAAGGGCTGAAAAATTTGACTCAGATGATGATGACAGACAGAAAGATGCAGGAAAAGGTCCAAGAGCTCATTCTGATGTTCCTGCTGAGGAGATGTTGTCTGATGAGTATTATGAGCAAGATGGGGAAGAGCAGAGTGATTCAATGCATTACAGGGGGATCAATAAGCCCACTGGATCAAATTCATGGCCTCAACGAATGTCAACCATTGAGAATAGAACTGTGCATAGGAGTTCGAGGTTTTCAGATGATGCTGTAGATAATGGTGATGATGATGATGATGATAATGATGAGGATGATGAAGATGATCCAGATGATGCAGACTTTGAACCCACCACAAGTGGTCATGCTGGAAACAAGGTTAACAAAGATTGGGAAGGTGAAGGATCAGATGAAGATGATGATAGTGATGAAAATACAGCTGTCTCAGATGATGATGAATCTTTCTATGCTAAAAAACCTAAGGGAAGGCAACGGGGTAAGGTGGGACAAAGCATAAAATCTACCAGAGATCGCCAAGTGTATGCTCCATCTGGTCGACAAAGAAGAGGTAGATCTTCTTTTGAAGACAACGAGTCAACAACAGAGGATTCTGACAGTGATAGTGATGAGGATTTCAAAAGAACAAAAAAGCGCAGTGTTCATGTCCGCAAGAATAATAGTCGCTCTTCCACTGTCTCTTGTTTTTCTACGCGGAACAGTGAGGTTCGCACTTCTAGTAGGACAGTTAGGAAGGTATCATATGTTGAGAGTGAAGAAAGTGAAGAAGCTGATGAAGGGAAGAAGAAGAAGTCCCAAAAGGAAGAAATTGAAGAGGAAGATGGTGACTCCATTGAAAAGGTGCTCTGGCATCAGCCAAAGGGCATGGCTGAAGATGCTCAAAGGAATAATAGATCAACAGAGCCTGTTTTAATGAGTCACTTGTTTGATTCGGTATTTGATTGGAATGAGATGGAATTTTTGATAAAATGGAAAGGGCAGTCACATTTGCACTGTCAGTGGAAGTCTTTCGCTGAGCTGCAAAATCTTAGTGGTTTTAAGAAGGTTTTGAATTATACGAAGAAAATAATGGAGGACATCAAGTATCGGAGGACAATCTCAAGAGAGGAGATTGAGGTCAATGATGTTAGTAAGGAGATGGATTTAGATATTATCAAACAAAATAGTCAGGTGGAAAGAATAATAGCAGATAGGATCAGCAAAGATAATTCTGGAAATGTTATTCCAGAATACTTGGTCAAGTGGCAAGGACTATCTTATGCTGAGGCAACTTGGGAAAAGGACATTGATATTGCTTTTGCTCAACATGCTATCGATGAGTATAAGGCTCGTGAGGCTGCTATGTCAGTTCAAGGAAAGATGGTAGATTCCCAGCGTAAGAAGAGCAAAGCAAGTTTGCGGAAGCTTGAGGAACAACCTGAATGGTTGAAGGGTGGAAAGCTGCGTGACTATCAACTTGAGGGTCTCAATTTTCTTGTTAACAGTTGGAGAAATGATACAAATGTAATTTTAGCTGATGAAATGGGTCTTGGAAAAACTGTTCAATCAGTATCGATGCTCGGTTTTCTACAGAATGCCCAGCAAATCCATGGTCCTTTTCTTGTGGTTGTTCCTCTGTCCACTTTATCAAACTGGGCCAAAGAATTCAGGAAGTGGCTTCCTGATATGAATATCATCATATACGTTGGTACACGAGCAAGTCGAGAGGTTTGTCAACAGTATGAATTTTATAATGATAAAAAGCCTGGAAAGCCAATAAAATTCAATGCACTGTTGACTACATATGAAGTAGTTCTGAAAGATAAGGCTGTTCTCTCGAAGATCAAATGGAATTATTTGATGGTGGATGAGGCTCATAGGCTAAAAAATAGTGAGGCACAGCTGTATACAACGCTTTCAGAATTTAGCACCAAGAACAAGTTGCTAATCACTGGAACTCCTCTGCAGAACAGTGTTGAAGAGCTGTGGGCTTTGCTCCACTTCCTTGATCATGACAAGTTCAGAAGCAAAGATGATTTTGTTCAAAACTATAAGAATCTGAGCTCTTTTAATGAGAATGAGCTTGCAAATCTTCACATGGAATTGAGGCCCCACATACTACGAAGAGTTATCAAAGATGTGGAGAAATCATTACCCCCCAAAATTGAGCGTATTCTTAGGGTTGAAATGTCTCCACTTCAGAAACAGTATTATAAGTGGATTTTGGAACGTAATTTCCACAATTTGAACAAAGGAGTTCGAGGGAATCAGGTTTCTCTTCTAAATATTGTGGTGGAACTGAAGAAGTGCTGCAACCATCCCTTCTTGTTTGAAAGTGCTGACCATGGCTATGGTGGAGACTCAGGAAGTAGTGACAACAGTAAACTAGAGAGAATTGTCTTTAGCAGTGGGAAGCTTGTCATACTTGATAAACTGCTTGTTAGATTGCATCAAACCAAGCATCGTGTCTTGATTTTCTCTCAGATGGTCAGGATGTTGGATATACTGGGAGAATATATGTCTCTTCGAGGGTTTCAATTTCAAAGGCTTGATGGAAGTACAAAAGCTGAGTTGCGACAGCAGGCAATGGATCATTTCAATGCACCTGGCAGTGATGATTTTTGCTTCCTTCTATCAACACGAGCAGGTGGTTTGGGTATTAACCTTGCCACAGCAGACACTGTCATAATTTTTGATTCTGATTGGAATCCTCAAAATGACCTGCAGGCAATGAGTAGAGCTCATAGAATTGGACAGCAGGAAGTTGTTAATATATATAGATTTGTGATGAGCAAAAGTGTTGAGGAAGATATTTTGGAACGTGCTAAGAAGAAGATGGTTCTGGACCATTTGGTGATTCAAAAACTCAATGCAGAGGGTAGACTGGAGAAGAAAGAAGCCAAAAAAGGAGGAAGTTATTTTGACAAAAATGAGCTGTCTGCAATCTTACGATTTGGAGCAGAGGAGCTTTTTAAGGAAGAAAGAAATGATGAAGAAAGTAAGAAACGACTCTTAAGTATGGATATTGATGAGATTCTTGAAAGAGCTGAGAAGGTTGAAGAAAAAGAAGCTGACGGGGAACAAGGAAATGAGTTGTTAAGTGCCTTCAAGGTTGCCAATTTCTGTAATGATGAAGATGATGGAAGTTTCTGGAGTCGTTGGATAAAGCCTGATGCAGTATTCCAAGCAGAGGAAGCTCTTGCTCCGCGATCTGCAAGAAATATTAAAAGCTATGCAGAGGCTGATCCAACTGAAAGAAGCAGTAAAAGAAAAAAGAAGGAACCTGAACCACCTGAGCGAGTTCAGAAACGCCGTAAAGCAGAGTATTCAGTTCCTGCAGCACCAATGATTGAGGGAGCATCTGTCCAAGTGAGAAATTGGTCATATGGAAATATATCTAAAAGAGATGCACTCCGTTTTTCTCGTTCTGTTATGAAATATGGGAATGAAAACCAAATCGACTTAATTGTTGCTGAGGTTGGTGGTGCTGTCGGGGCAGCACCACCTGAATCTCAGATTGAACTTTTCAATGCTCTAATTGATGGCTGTACAGAAGCAGTGGAAGTTGGAAATGTGGATGTAAAGGGGCCTTTGCTGGATTTTTTTGGTGTCCCGGTGAAGGCAAATGATCTACTTACTCGTGTCCAACAACTTCAACTTCTAGCGAAGCGCATTGGTCGGTATGAAGATCCTATTGCACAGTTCCGTGTTCTATCGTATCTAAAACCTTCAAACTGGTCAAAAGGTTGTGGGTGGAATCAAATTGATGATGCTAGATTGCTTCTTGGAGTATATTACCATGGGTTTGGTAATTGGGAAAAGATTAGATTGGATGAAAGACTTGGCCTTACAAAAAAAATTGCACCTGTAGAACTTCAACACCATGAAACTTTCTTGCCACGAGCGCCAAATTTGAAAGACCGTGCTAATGCCCTTTTGGAGCAAGAACTTGCAGTTCTTGGTGTAAAAAATGCCAACAGCAAAGTTGGACGGAAGCTGGCCAAGAAAGAGAGGGAAAATATGATGAACATCTCACTGTTGCGTGGGCCGGAGAAGAAGAAAAAAATGAGTTCTGTTAATGTCCCAATGAGAAAGGATAGGATTCAGAAACCCCAAAAGGTTGAACCTATAGTAAAGGAGGAGGGTGAAATGTCCGACAATGAGGAAGTATATGAGCAGTTCAAGGAGGTAAAATGGATGGAATGGTGTCAAGATGTGATGGAGGAAGAAATGAAAACTTTGAAACGTCTTCACAGGTTGCAGACAACTAGTGCCAATCTTCCAAAGGAAAAGGTGCTTTCAAAAATACGCAACTATTTACAACTTCTTGGGCGAAGGATAGATCAAATTGTGTTGGAACATGAAGAGGAACCCTATAAGCAAGATAGAATGACTGTGCGATTGTGGAAATATGTCTCCACCTTCTCCCATCTTTCAGGGGAGAGGCTTCATCAAATATATTCCAAACTTGAACAGGAGCAAGAAGATGAGGCAGGGATTGGCCCTTCTCACGTCAATGGATCAGTATCTGCTTCATTTAGCAGAAACGGAAACCCATTTCGGCGCCATATGGAGAGGCAAAGAGGATTAAAAAATATGACTACCTATCAAATTCCAGAAACAGTTAATAATACAGGGAAATCTGAGGCATGGAAACGAAGAAGAAGAGCAGAAAATGATGATCATTTCCAGGGTCAGCCACTACCTCAAAGAACAACTAGTAATGGAATCCGAATTACTGATCCTAACTCACTCGGCATCCTAGGTGCTGGACCATCTGATAAACGCTTTGTTGGTGAGAAACCTTATAGGACACAACCTGTTGGGTTTCCTTCAAGACAAGGCTTCTCTTCAGGTATAAAGTAG 5259 0.4094 MAFFRNFLNDTVSHGVMEDKGQGQNANGVRRSMGNECTDATSSEKEFDMNMEAQYESDGEPDGASRLQTEATADDGDDLKEANLQTTGSKTAMVGRWGSTFWKDCRPMCPQNGSESGQESKSGSDYKNADGSEDNSLDGRAEKFDSDDDDRQKDAGKGPRAHSDVPAEEMLSDEYYEQDGEEQSDSMHYRGINKPTGSNSWPQRMSTIENRTVHRSSRFSDDAVDNGDDDDDDNDEDDEDDPDDADFEPTTSGHAGNKVNKDWEGEGSDEDDDSDENTAVSDDDESFYAKKPKGRQRGKVGQSIKSTRDRQVYAPSGRQRRGRSSFEDNESTTEDSDSDSDEDFKRTKKRSVHVRKNNSRSSTVSCFSTRNSEVRTSSRTVRKVSYVESEESEEADEGKKKKSQKEEIEEEDGDSIEKVLWHQPKGMAEDAQRNNRSTEPVLMSHLFDSVFDWNEMEFLIKWKGQSHLHCQWKSFAELQNLSGFKKVLNYTKKIMEDIKYRRTISREEIEVNDVSKEMDLDIIKQNSQVERIIADRISKDNSGNVIPEYLVKWQGLSYAEATWEKDIDIAFAQHAIDEYKAREAAMSVQGKMVDSQRKKSKASLRKLEEQPEWLKGGKLRDYQLEGLNFLVNSWRNDTNVILADEMGLGKTVQSVSMLGFLQNAQQIHGPFLVVVPLSTLSNWAKEFRKWLPDMNIIIYVGTRASREVCQQYEFYNDKKPGKPIKFNALLTTYEVVLKDKAVLSKIKWNYLMVDEAHRLKNSEAQLYTTLSEFSTKNKLLITGTPLQNSVEELWALLHFLDHDKFRSKDDFVQNYKNLSSFNENELANLHMELRPHILRRVIKDVEKSLPPKIERILRVEMSPLQKQYYKWILERNFHNLNKGVRGNQVSLLNIVVELKKCCNHPFLFESADHGYGGDSGSSDNSKLERIVFSSGKLVILDKLLVRLHQTKHRVLIFSQMVRMLDILGEYMSLRGFQFQRLDGSTKAELRQQAMDHFNAPGSDDFCFLLSTRAGGLGINLATADTVIIFDSDWNPQNDLQAMSRAHRIGQQEVVNIYRFVMSKSVEEDILERAKKKMVLDHLVIQKLNAEGRLEKKEAKKGGSYFDKNELSAILRFGAEELFKEERNDEESKKRLLSMDIDEILERAEKVEEKEADGEQGNELLSAFKVANFCNDEDDGSFWSRWIKPDAVFQAEEALAPRSARNIKSYAEADPTERSSKRKKKEPEPPERVQKRRKAEYSVPAAPMIEGASVQVRNWSYGNISKRDALRFSRSVMKYGNENQIDLIVAEVGGAVGAAPPESQIELFNALIDGCTEAVEVGNVDVKGPLLDFFGVPVKANDLLTRVQQLQLLAKRIGRYEDPIAQFRVLSYLKPSNWSKGCGWNQIDDARLLLGVYYHGFGNWEKIRLDERLGLTKKIAPVELQHHETFLPRAPNLKDRANALLEQELAVLGVKNANSKVGRKLAKKERENMMNISLLRGPEKKKKMSSVNVPMRKDRIQKPQKVEPIVKEEGEMSDNEEVYEQFKEVKWMEWCQDVMEEEMKTLKRLHRLQTTSANLPKEKVLSKIRNYLQLLGRRIDQIVLEHEEEPYKQDRMTVRLWKYVSTFSHLSGERLHQIYSKLEQEQEDEAGIGPSHVNGSVSASFSRNGNPFRRHMERQRGLKNMTTYQIPETVNNTGKSEAWKRRRRAENDDHFQGQPLPQRTTSNGIRITDPNSLGILGAGPSDKRFVGEKPYRTQPVGFPSRQGFSSGIK* 1753
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr9g1642 1752 Gene3D - 610 849 IPR038718 -
Apr9g1642 1752 SUPERFAMILY Chromo domain-like 410 494 IPR016197 -
Apr9g1642 1752 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 939 1090 IPR001650 -
Apr9g1642 1752 SMART DUF4208_2 1516 1621 IPR025260 -
Apr9g1642 1752 Gene3D - 529 581 - -
Apr9g1642 1752 Pfam Domain of unknown function (DUF4208) 1528 1620 IPR025260 -
Apr9g1642 1752 CDD CD1_tandem 412 492 - -
Apr9g1642 1752 Gene3D - 1346 1460 - -
Apr9g1642 1752 MobiDBLite consensus disorder prediction 224 246 - -
Apr9g1642 1752 MobiDBLite consensus disorder prediction 111 125 - -
Apr9g1642 1752 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 631 803 IPR014001 -
Apr9g1642 1752 Coils Coil 1133 1153 - -
Apr9g1642 1752 MobiDBLite consensus disorder prediction 384 417 - -
Apr9g1642 1752 SUPERFAMILY Chromo domain-like 506 582 IPR016197 -
Apr9g1642 1752 Gene3D - 850 1080 IPR027417 -
Apr9g1642 1752 MobiDBLite consensus disorder prediction 189 213 - -
Apr9g1642 1752 MobiDBLite consensus disorder prediction 1675 1752 - -
Apr9g1642 1752 Pfam Helicase conserved C-terminal domain 936 1049 IPR001650 -
Apr9g1642 1752 SMART ultradead3 615 814 IPR014001 -
Apr9g1642 1752 MobiDBLite consensus disorder prediction 15 417 - -
Apr9g1642 1752 ProSiteProfiles Chromo and chromo shadow domain profile. 414 502 IPR000953 -
Apr9g1642 1752 ProSiteProfiles Chromo and chromo shadow domain profile. 527 591 IPR000953 -
Apr9g1642 1752 MobiDBLite consensus disorder prediction 1210 1238 - -
Apr9g1642 1752 MobiDBLite consensus disorder prediction 1203 1239 - -
Apr9g1642 1752 PANTHER CHROMODOMAIN-HELICASE-DNA-BINDING PROTEIN 3-RELATED-RELATED 112 1659 - -
Apr9g1642 1752 Coils Coil 1079 1099 - -
Apr9g1642 1752 CDD SF2_C_SNF 925 1060 - -
Apr9g1642 1752 Pfam Chromo (CHRromatin Organisation MOdifier) domain 528 582 IPR023780 -
Apr9g1642 1752 SMART chromo_7 444 495 IPR000953 -
Apr9g1642 1752 SMART chromo_7 525 584 IPR000953 -
Apr9g1642 1752 MobiDBLite consensus disorder prediction 357 383 - -
Apr9g1642 1752 MobiDBLite consensus disorder prediction 266 282 - -
Apr9g1642 1752 MobiDBLite consensus disorder prediction 25 40 - -
Apr9g1642 1752 MobiDBLite consensus disorder prediction 126 169 - -
Apr9g1642 1752 CDD CD2_tandem 525 581 - -
Apr9g1642 1752 Gene3D - 400 527 - -
Apr9g1642 1752 PANTHER CHROMODOMAIN-HELICASE-DNA-BINDING PROTEIN 1 112 1659 - -
Apr9g1642 1752 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 843 1125 IPR027417 -
Apr9g1642 1752 SMART helicmild6 965 1049 IPR001650 -
Apr9g1642 1752 MobiDBLite consensus disorder prediction 1678 1693 - -
Apr9g1642 1752 MobiDBLite consensus disorder prediction 1625 1653 - -
Apr9g1642 1752 MobiDBLite consensus disorder prediction 1696 1712 - -
Apr9g1642 1752 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 606 840 IPR027417 -
Apr9g1642 1752 Pfam SNF2-related domain 638 907 IPR000330 GO:0005524|GO:0140658
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr9g1642 Apr-Chr9 25754529 25772260 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr9g1642 641 1076 RAD5 or RAD16-like Gene Family AT1G02670 25.737 1.13e-35 144
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Apr9g1642 SNF2_N 7e-64 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr9g1642 K11367 - gmx:100808039 3075.8