Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr9g1636 ATGGAAGAATCAAGTGAACTGCAGTCAGAAGAAAATAAAGTCTCCATGGAGAAAAATAAGAAAAGAAAACTGAAAACACCTGCCCAGGTTATGGCTTTGGAGAAATTTTATAATGTGCACAAATATCCTACAGAGGAAATGAAAGTAGAACTTGCTGAGGAGTTAGGATTGACAGAAAAGCAGATATCTGGATGGTTTTGTCACAGACGGTTAAAAGACAAAAGATTGTCAAAAGATGAAACTGTTGCTAATGGACGACAAGATCGTTCAAGTGGTGTCATCCAGGATCGTGGCAGTGGACTTGGGCAAGATTCATGTGGAAGCAGTAAACATGCTGATTATAAGTATCTGGATCCTAAGGAGGTTGAGAGCCATGGCCTCTACAATCATGAATTTTCAGTTGCAGATATGACCCATGGACGTAGGAACTGTTATCGTGAAAACGACAGTGAAATGGATGACACATCCTCTGAGAGCAGCTCATTTTTGCAAGAAAGGTTGTTTCCTCAAGGCCAGGATCCGTATGATATGGAGCCTTCTAGATATCTTACACCTAACGGAGCTCTTCCACCTGTAAATCCCAAAGGTGCAATTAACATGGGATATAAACCATCAGGATATTTGAAAGTGAAGGGTGAGATAGAACATGCTGCTATAACTGCTGTTAAGAAGCAATTAGGAAGGCATTACCACGAAGATGGTCCACTACTTGGCGTAGAATTTGATCCACTTCCCCCAGGTGCATTTGAAGGCCAAACTGCTGATCTAGTTAATGAACCATATGGTGTTGCAAATCCTCCTCATCCAAATTCTCCAGAAATCTCAGCTGTAAAAAGGCAACCCAATCTTAGCTCTAGATATGATTCATATAATGCTAAATTTAATTCCCAAGATTCACATATAGAAGGAGCTGACTTTGGCTCCTTGCATGAATCTGATTTCCAGGATAAACAAGATAAAAAAGCCCGCCAGAATATAAAACAAAGGCAAGCATTTTATAGTCATGCTCATCATTTTCCTGGAAGGAACTCTTCCCTAGATTTGTATGAAGACTCTCCTGGAGAAGCATCTGCTTATAATAGTAAGAATCATAGAATGAGCACTAAGCATGGTGTTGAGGGGATGAGATCTGATTCTGCTTCTAACCACAGTGATCATTATGAAGAGAAGCTTGCAGTTAAGCAGACAGACTTGCTGCGACACGGTTATGATAACATCAAGCCAAAGAATATACAACGGAGAGAACACGTAAAATCTAAACCGTCAAGTTCAATTCGAAATTCCCGAGTTTCTATGGATACTGAAGAAAGGGGGTTATCTGCTAGGATCACAAAGGAAGAGATGTTTAAGGGGGACAGGAAGACAAAAAATACATATCGTGATGTAGATGGAGCAGGGATGCTTTCAAATGAAATCACAGTTGCAAAACGAGTTAAAGTTGATACATTTCAACAATACAAAATGAAAAACTCACCTGGTGCTGAGATGGAACAAAGGAAAAATCAGAGATCAGCTGCAGAGATGCCGTCTAGTTTTAGCGAGGATGAAACTGCTGACACCAGTTCCTCACTGGATTATTAA 1581 0.4016 MEESSELQSEENKVSMEKNKKRKLKTPAQVMALEKFYNVHKYPTEEMKVELAEELGLTEKQISGWFCHRRLKDKRLSKDETVANGRQDRSSGVIQDRGSGLGQDSCGSSKHADYKYLDPKEVESHGLYNHEFSVADMTHGRRNCYRENDSEMDDTSSESSSFLQERLFPQGQDPYDMEPSRYLTPNGALPPVNPKGAINMGYKPSGYLKVKGEIEHAAITAVKKQLGRHYHEDGPLLGVEFDPLPPGAFEGQTADLVNEPYGVANPPHPNSPEISAVKRQPNLSSRYDSYNAKFNSQDSHIEGADFGSLHESDFQDKQDKKARQNIKQRQAFYSHAHHFPGRNSSLDLYEDSPGEASAYNSKNHRMSTKHGVEGMRSDSASNHSDHYEEKLAVKQTDLLRHGYDNIKPKNIQRREHVKSKPSSSIRNSRVSMDTEERGLSARITKEEMFKGDRKTKNTYRDVDGAGMLSNEITVAKRVKVDTFQQYKMKNSPGAEMEQRKNQRSAAEMPSSFSEDETADTSSSLDY* 527
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr9g1636 526 MobiDBLite consensus disorder prediction 7 25 - -
Apr9g1636 526 Pfam Homeodomain 20 75 IPR001356 GO:0003677
Apr9g1636 526 MobiDBLite consensus disorder prediction 1 25 - -
Apr9g1636 526 MobiDBLite consensus disorder prediction 351 383 - -
Apr9g1636 526 PANTHER HOMEODOMAIN-LIKE SUPERFAMILY PROTEIN 1 525 - -
Apr9g1636 526 ProSiteProfiles 'Homeobox' domain profile. 16 76 IPR001356 GO:0003677
Apr9g1636 526 MobiDBLite consensus disorder prediction 86 106 - -
Apr9g1636 526 SUPERFAMILY Homeodomain-like 18 83 IPR009057 -
Apr9g1636 526 MobiDBLite consensus disorder prediction 413 437 - -
Apr9g1636 526 CDD homeodomain 20 75 IPR001356 GO:0003677
Apr9g1636 526 MobiDBLite consensus disorder prediction 78 109 - -
Apr9g1636 526 SMART HOX_1 18 80 IPR001356 GO:0003677
Apr9g1636 526 MobiDBLite consensus disorder prediction 503 526 - -
Apr9g1636 526 PANTHER HOMEODOMAIN-LIKE SUPERFAMILY PROTEIN 1 525 - -
Apr9g1636 526 Gene3D - 8 92 - -
Apr9g1636 526 MobiDBLite consensus disorder prediction 486 526 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr9g1636 Apr-Chr9 25707989 25714754 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr9g1636 3 525 Homeobox Transcription Factor Family AT4G03250 42.164 5.26e-95 296
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-other Apr9g1636 Homeodomain 1.1e-16 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr9g1636 - - gmx:100803515 875.93
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr9g1636 9 25707989 25714754 Apr9g1636 9 25707989 25714754 PCT