Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr9g1633 ATGGGCATGTTTGTGGTGGCACCTGCTTCGTCCTTCCACCACCACCACCACCATCATCCACCGCAACAGCCTCACGACCCTCTCATCGCCGGCGATTCCCTCAACCCCGCCACTGCACTCGGCGTCGGCGTCATCCCCCTCCTCACCGCCACCCCTTGTCTTGAATCTGACAACATCCTCGGGAACCGTACACGAGGTGCTGGAATTCAGTTTTGGCAAGACCAATCACCCCAACAAAGCCACTACTTGAAGAAGCAACAGGGTCTTCTAGAACATTCCGGAAACATGGTTCAGGGTGGTGGTGGTGGAGTATCTGCTTCGGGTGGTAGTAGTAGTGGTGGAACTACGTGCCAAGATTGTGGAAACCAGGCTAAGAAAGATTGTGCTAATAGAAGGTGTAGAACTTGTTGCAAGAGTCGTGGCTTTGATTGCCCTACCCACGTGAAAAGCACGTGGGTCCCCGCCGCACGCCGGAGAGAACGCCAGCTCATGGTGGCGGCCACGGCCGCGGTTGCTGGCTCTAGCGGTTCAACTTCTGGTACAAAGAAACCTAGACTCATTGCTTCACAAACTACCACAACTTCACATACTTCCACTTCTAACACCACTCCTCCTAGGAGCTTTGACACTGGCTCTAGCCATCAAGATGCGAGTTTCAAAGAGTCTTTACCTGGACAAGTACGTGCACCCGCGGTTTTCAAGTGTGTTAGAGTGTCACCAATGGAGGATGGGCAAGATGAGTTTGCGTATCAGGCTGTGGTGAAGATTGCTGGGCACGTGTTTAAAGGGTTTCTTTATGATCAAGGGGCTGAGACTAGGGATGTGTATCCAAATCTATCTGAATTGCATTTGGGTGGTGGTAATGGTGGAAGTGGAAGTGGAGGGAGTGGTGGTGGTGGAGTTGGGAGAAATGGGGTCTCTTCTTCATCACCAATGATGGATCCTTCTGATGTTTATGCAGCTTCAGGTGGGGGTTTACTAGGGGGTTCTTCAACCTATGGCAATCCAATAAATTGA 1017 0.5162 MGMFVVAPASSFHHHHHHHPPQQPHDPLIAGDSLNPATALGVGVIPLLTATPCLESDNILGNRTRGAGIQFWQDQSPQQSHYLKKQQGLLEHSGNMVQGGGGGVSASGGSSSGGTTCQDCGNQAKKDCANRRCRTCCKSRGFDCPTHVKSTWVPAARRRERQLMVAATAAVAGSSGSTSGTKKPRLIASQTTTTSHTSTSNTTPPRSFDTGSSHQDASFKESLPGQVRAPAVFKCVRVSPMEDGQDEFAYQAVVKIAGHVFKGFLYDQGAETRDVYPNLSELHLGGGNGGSGSGGSGGGGVGRNGVSSSSPMMDPSDVYAASGGGLLGGSSTYGNPIN* 339
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr9g1633 338 MobiDBLite consensus disorder prediction 97 116 - -
Apr9g1633 338 PANTHER PROTEIN LATERAL ROOT PRIMORDIUM 1 1 338 IPR007818 GO:0003700|GO:0006355
Apr9g1633 338 Pfam Domain of unknown function (DUF702) 114 271 - -
Apr9g1633 338 MobiDBLite consensus disorder prediction 171 220 - -
Apr9g1633 338 TIGRFAM LRP1_Cterm: LRP1 C-terminal domain 223 269 IPR006511 -
Apr9g1633 338 MobiDBLite consensus disorder prediction 7 28 - -
Apr9g1633 338 MobiDBLite consensus disorder prediction 169 223 - -
Apr9g1633 338 PANTHER PROTEIN LATERAL ROOT PRIMORDIUM 1 1 338 - -
Apr9g1633 338 MobiDBLite consensus disorder prediction 286 317 - -
Apr9g1633 338 TIGRFAM put_zinc_LRP1: putative zinc finger domain, LRP1 type 116 158 IPR006510 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr9g1633 Apr-Chr9 25665769 25668176 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr9g1633 3 318 C2H2 Transcription Factor Family AT5G12330 51.807 1.20e-79 247
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SRS Apr9g1633 DUF702 6.8e-61 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr9g1633 - - gsj:114385228 463.766
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr9g1633 9 25665769 25668176 Apr9g1633 9 25665769 25668176 PCT