Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr9g1619 ATGGAGGATGTGAGAGGCACCTATTCATTGGGGAAAGAGCTAGGGAGAGGACAATTTGGTGTCACACATTTGTGCACACACAAGACCACAGGGCGGCAATATGCATGCAAAACAATAGCTAAGAGAAAGCTTGTGAACAAGGAGGATATAGAAGATGTTAAAAGGGAGGTTCAAATCATGCACCATCTCTCGGGGCAGCCTAATATTGTGGAACTTGTTGGCGTGTATGAGGATAAGCAATCTGTTCATTTGGTGATGGAGTTGTGTGCTGGGGGTGAACTCTTCGATCGTATCATTGCCAAGGGACATTACACTGAGCGTGCTGCGGCTTCCTTGTTGAGAACCATTGTTCAGATTGTGCATACTTTCCATTCCATGGGTGTCATTCATAGAGATCTTAAGCCTGAGAATTTCCTCTTGTTGAACAAGGATGAGAATGCACCCCTCAAGGCCACCGATTTTGGCCTTTCAGTTTTTTACAAGCAAGGAGAGGTGTTCAAAGACCTTGTTGGTAGTGCTTATTACATTGCACCTGAGGTCTTGAAGAGGAGATATGGGCCAGAAGTAGACATTTGGAGTATCGGGGTCATGTTATACATTCTTCTATCCGGTGTTCCTCCATTTTGGGCAGAATCCGAAAATGGGATATTCAAAGCCATTCTACGAGGCCATGTTGACTTCACAAGCGATCCGTGGCCATCCATTTCACCTGCAGCTAAAGATCTTGTAAGGAAAATGTTGAATTCGGATCCCAAGCAGAGGCTGACGGCCTACCAAGTTCTGAATCATCCATGGATCAAGGAGGATGGAGAAGCACCGGATACACCTCTTGACAATGCAGTGCTGAATAAGCTCAAACAATTCAGAGCAATGAACCAATTCAAGAAAGTTGCTCTAAGGGTCATTGCCGGGTGCCTATCAGAGGAAGAAATCATGGGATTGAAGCAGATGTTTAGGGGAATGGACACTGACAACAGTGGAACCATAACAATTGAAGAGCTAAAGCAAGGACTCGCAAAACAAGGGACTAAGCTGACAGAACAGGAAGTTAAGCAATTAATGGAAGCTGCAGATGCTGATGGCAATGGAACCATAGATTACGATGAATTCATCACAGCAACAATGCACATGAACCGAGTAAACAGAGAAGAACATCTCTACACTGCCTTCCAATACTTTGACAAAGATAACAGCGGGTACATTACCATTGAAGAACTGGAGCAAGCTCTCAAAGAGTTTAACATGCACGACGGCAGGGACATCAACGAAATCCTTTCAGAAGTTGATGCAGATAATGATGGCCGGATTAACTACGATGAGTTCGCTGCAATGATGAGCAAAGGAAATATAATCGGCCAAACTATCAAAATGCAACAAGAAAATAGTATGTGA 1392 0.4404 MEDVRGTYSLGKELGRGQFGVTHLCTHKTTGRQYACKTIAKRKLVNKEDIEDVKREVQIMHHLSGQPNIVELVGVYEDKQSVHLVMELCAGGELFDRIIAKGHYTERAAASLLRTIVQIVHTFHSMGVIHRDLKPENFLLLNKDENAPLKATDFGLSVFYKQGEVFKDLVGSAYYIAPEVLKRRYGPEVDIWSIGVMLYILLSGVPPFWAESENGIFKAILRGHVDFTSDPWPSISPAAKDLVRKMLNSDPKQRLTAYQVLNHPWIKEDGEAPDTPLDNAVLNKLKQFRAMNQFKKVALRVIAGCLSEEEIMGLKQMFRGMDTDNSGTITIEELKQGLAKQGTKLTEQEVKQLMEAADADGNGTIDYDEFITATMHMNRVNREEHLYTAFQYFDKDNSGYITIEELEQALKEFNMHDGRDINEILSEVDADNDGRINYDEFAAMMSKGNIIGQTIKMQQENSM* 464
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr9g1619 463 Gene3D - 274 449 - -
Apr9g1619 463 ProSitePatterns EF-hand calcium-binding domain. 322 334 IPR018247 -
Apr9g1619 463 Gene3D Transferase(Phosphotransferase) domain 1 94 273 - -
Apr9g1619 463 Pfam EF-hand domain pair 383 446 IPR002048 GO:0005509
Apr9g1619 463 Pfam EF-hand domain pair 314 374 IPR002048 GO:0005509
Apr9g1619 463 ProSiteProfiles EF-hand calcium-binding domain profile. 420 451 IPR002048 GO:0005509
Apr9g1619 463 SMART efh_1 385 413 IPR002048 GO:0005509
Apr9g1619 463 SMART efh_1 313 341 IPR002048 GO:0005509
Apr9g1619 463 SMART efh_1 420 448 IPR002048 GO:0005509
Apr9g1619 463 SMART efh_1 349 377 IPR002048 GO:0005509
Apr9g1619 463 ProSitePatterns EF-hand calcium-binding domain. 358 370 IPR018247 -
Apr9g1619 463 PANTHER SERINE/THREONINE-PROTEIN KINASE 1 454 - -
Apr9g1619 463 ProSitePatterns Serine/Threonine protein kinases active-site signature. 128 140 IPR008271 GO:0004672|GO:0006468
Apr9g1619 463 PANTHER CALMODULIN-DOMAIN KINASE CDPK PROTEIN 1 454 - -
Apr9g1619 463 ProSiteProfiles Protein kinase domain profile. 8 266 IPR000719 GO:0004672|GO:0005524|GO:0006468
Apr9g1619 463 SMART serkin_6 8 266 IPR000719 GO:0004672|GO:0005524|GO:0006468
Apr9g1619 463 Gene3D Phosphorylase Kinase; domain 1 10 93 - -
Apr9g1619 463 CDD STKc_CAMK 8 265 - -
Apr9g1619 463 Pfam Protein kinase domain 8 266 IPR000719 GO:0004672|GO:0005524|GO:0006468
Apr9g1619 463 SUPERFAMILY Protein kinase-like (PK-like) 5 267 IPR011009 -
Apr9g1619 463 ProSitePatterns EF-hand calcium-binding domain. 429 441 IPR018247 -
Apr9g1619 463 ProSitePatterns EF-hand calcium-binding domain. 394 406 IPR018247 -
Apr9g1619 463 ProSiteProfiles EF-hand calcium-binding domain profile. 309 344 IPR002048 GO:0005509
Apr9g1619 463 ProSiteProfiles EF-hand calcium-binding domain profile. 381 416 IPR002048 GO:0005509
Apr9g1619 463 ProSiteProfiles EF-hand calcium-binding domain profile. 345 380 IPR002048 GO:0005509
Apr9g1619 463 SUPERFAMILY EF-hand 306 447 IPR011992 -
Apr9g1619 463 ProSitePatterns Protein kinases ATP-binding region signature. 14 41 IPR017441 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr9g1619 Apr-Chr9 25537297 25547676 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr9g1619 1 449 EF-hand Containing Proteins AT5G12180 87.528 0.0 843
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CDPK Apr9g1619 Pkinase 2.6e-75 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr9g1619 K13412 - gmx:100820422 865.914