Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr9g1616 ATGGCAGATAGTGTGGTAGAAATATTACTAAATGAACTTTCTCGGGTGGTGAAGGAAGAGGTAAATTTGCAGAAAGGAGTGAAAGATGAAATTAAGAAGGTTAAAGATGAACTTGCAACCATGAAAGCTTTTCTAAGATTTGTTGATGTCCAACAAGAGAAAGACCTAAGGCTTAAGCCATGGGTGGAGCAAGTGAGAGATGTTGCTTTTGAGATAGAAGATGTTGTCGATGACTACTTGCTTCAAATTGCTAGCGATGATGATGCAGGTAGTGCACATAACACTTGTTTCCGTAGCATTTGTTCCCCTTTCAAAAAGTGGAAAGCAAGGCACCAAATCGGTTCTGAGCTACAAAACATCAGAGGCAGAGTGAGTGAAATAGCAGAGCGTCCAAAAAGGTATGGCTATGATCCTTCACTCTTCAAGCAAGCTTCGAGTTCAAGCTCAGACGCAGGCCCTTCAGAGATGGATCAGTTTCGAAAGAATGTTGCAGCTTCGGTTGACGAAAGGCAATTGGTTGGCATAGATGCAGCAAAGGAGGAGGTGGTGAATTTGCTCAACGATGGTGACCTCAGTCTCAAAGTAGTCTCCATTGTTGGCATGGGAGGGTTGGGCAAAACAACCTTAGCCAAACAAATCTTCCGTGACATGTCGTCCCATTTCGAACGACGTGCGTTTGGCATTGTTTCCCAAACCTTGAAGGAAGATGAGTTTTTCAAAGACTTAATTGAGCAGCTGTTCTCCAAAGATGGAGAGATGTTGGAAATGCAACAACTGTTACAACTGCCATTACATCGGTTGAAAGAAAAACTGAGGGAAAGGCTTGAGAATGAAAGGTACTTGATTGTGGTTGATGACGTGTGGAAAACAAAACATTGGGATCAGATTAAAATGTCATTCCCCAGAAACAACAATGGGAGCAGAGTGATTGTTACAACTCGCATGGCACACGTGGCAAACCACTCTAGCGTGGAGTATGGTGGTGATGTCCATCAACTACAACCTTTGACTCAAGAAGATTCCTGGGATCTGTTCTGTAAGAGAACATTCCCAAAACAGCCTTGCCCTTCCCATTTGGAACCCATTTGCAAAGACATTGTTTTCAACAAATGCAAGGGAGTTCCTATTGCTATATTGGCAATTGGTGGCCTTTTAAGTACCAAAAAGTTGGGTGACGTTGACGAGTGGAAGAAGGTTCAAGAGAGTCTTAACATTGAGTTAGAGGAAAATCCTGAACTAGAAATGACCAAAAAGATACTCTCTTTGAGCTTTGATGATTTGCCTGATCACCTCAAACCTTGTTATATGTACTTGTGTATTTTCCCAGAAGATTCTCTCATAAAGTGGACGAGAGTGATTAGGTTGTGGATCGCAGAAGGTTTTGTGGCAAAGAGAGATGGAAGAACGATGGAGGAAGACGCTGACAGCTATTTGTGTGAGCTTGTTAACAGAAGCTTGATACAAATAGTTAAAGAAAGAAAGGATGGAAGTGGAAAGGTGAAGTGGTATCGCATCCACGACTTTCTACGAGATATTGTTCTCTCAAAGTCCAAAGAAGAGAGATTTGTTCAAATGGCAGATACGGTGGACGTTGGAGCAAGGCGATTATGTATCCATGCAAATGCGACAAAGAGAGGTATCGACATTAACTTACTTTTGGCATTGCCTCAACGACTACGATCTCTATTGATGTTCTTTAATATCCCTGGTGATGAGGCTGAGGAAAATGCAAATGATACTTTTTTATCGCGTGATATTGGCTTCAAGTTTAATAAGCTGCTTAGTGTGTTAGATTTGGAAAGAGCTCCCTTAGATGCATTTCCTGAAGAAATTTGCACCTTGCTCCTCCTACGGTATTTGTGTTTGAGAAATACTAAAATCTCAAAGCTTCCAAAGTCTATTGGGAATTTGGAAAGGCTAGAAATGTTGGACCTTAAGTACACCTTAATTGCTGAGTTACCTCAAGAGATATCAATGCTGCATAAAAAGCTTCGCCATCTTTTAATTTCTCGTTGCCATCAAGCTGAAATAGAGTATTCGAAACGTCATGTTGACAAAAAAATAGTATATTTGAATGGAGAAACAAATGTGGACTATTATTTTTCTTTGTATGATCATAAATCATGTGGTGTTAAGGTAACATGCAATATTGGAAAGTTTGATTCATTACAAAAGGTGAGCTTCCTTGAAGCACCAGAAAACAGCATGTGGATGAAGGATCTTGGGAGGTTGAGGCAACTGAGAAAGTTGGGTTTGGTTAAATTGAGAAAGGAACAGTGGAGAGAAGTATGTTCATGCATTTCAAGATTAATAAATCTGCGCTCTCTAATGCTTCAAACAGATTACTGGTTTGAGTTGGAAGATGTGTGTCCACCTCCAAACCTTCAAAAATTACATTTGAATGGAAGTCTAAAGGAGTTACCAAGTTGGGTAAGTGGTTCATCTCTAAAGAACTTGCTTCTATTGAAGTTGATGAATACGAGACTGAAGAAGGACCCTGGCCCATCTCTCATGGGTTTGCCCAATTTGAGTAGGCTTGAGCTTTATAAGGCTTTCGATGATGGCATCAAGATGCGAGTGGTGCTCCCTGGTAATCCTTTCCCAAGCCTCATCATGTTGAGAGGATATTCTGATTATTATGCTGGTTATAGGGCATCCTTCAAAGACTATTCCAAGGATGAAGTTTGGGAATGGGTGGCTAGTTTGACTGACATGGATGACATGGATAGAACTATTCTAGTCGGCCTAGACAATCTCATCCCCTTAGCTTCAGTTGATTAA 2781 0.4088 MADSVVEILLNELSRVVKEEVNLQKGVKDEIKKVKDELATMKAFLRFVDVQQEKDLRLKPWVEQVRDVAFEIEDVVDDYLLQIASDDDAGSAHNTCFRSICSPFKKWKARHQIGSELQNIRGRVSEIAERPKRYGYDPSLFKQASSSSSDAGPSEMDQFRKNVAASVDERQLVGIDAAKEEVVNLLNDGDLSLKVVSIVGMGGLGKTTLAKQIFRDMSSHFERRAFGIVSQTLKEDEFFKDLIEQLFSKDGEMLEMQQLLQLPLHRLKEKLRERLENERYLIVVDDVWKTKHWDQIKMSFPRNNNGSRVIVTTRMAHVANHSSVEYGGDVHQLQPLTQEDSWDLFCKRTFPKQPCPSHLEPICKDIVFNKCKGVPIAILAIGGLLSTKKLGDVDEWKKVQESLNIELEENPELEMTKKILSLSFDDLPDHLKPCYMYLCIFPEDSLIKWTRVIRLWIAEGFVAKRDGRTMEEDADSYLCELVNRSLIQIVKERKDGSGKVKWYRIHDFLRDIVLSKSKEERFVQMADTVDVGARRLCIHANATKRGIDINLLLALPQRLRSLLMFFNIPGDEAEENANDTFLSRDIGFKFNKLLSVLDLERAPLDAFPEEICTLLLLRYLCLRNTKISKLPKSIGNLERLEMLDLKYTLIAELPQEISMLHKKLRHLLISRCHQAEIEYSKRHVDKKIVYLNGETNVDYYFSLYDHKSCGVKVTCNIGKFDSLQKVSFLEAPENSMWMKDLGRLRQLRKLGLVKLRKEQWREVCSCISRLINLRSLMLQTDYWFELEDVCPPPNLQKLHLNGSLKELPSWVSGSSLKNLLLLKLMNTRLKKDPGPSLMGLPNLSRLELYKAFDDGIKMRVVLPGNPFPSLIMLRGYSDYYAGYRASFKDYSKDEVWEWVASLTDMDDMDRTILVGLDNLIPLASVD* 927
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr9g1616 926 PANTHER OS08G0539900 PROTEIN 163 874 - -
Apr9g1616 926 PANTHER OS08G0539900 PROTEIN 1 135 - -
Apr9g1616 926 Pfam Rx N-terminal domain 5 90 IPR041118 -
Apr9g1616 926 CDD RX-CC_like 2 129 IPR038005 -
Apr9g1616 926 PANTHER DISEASE RESISTANCE PROTEIN RP 163 874 IPR044974 GO:0006952
Apr9g1616 926 PANTHER DISEASE RESISTANCE PROTEIN RP 1 135 IPR044974 GO:0006952
Apr9g1616 926 Gene3D - 5 114 - -
Apr9g1616 926 PRINTS Disease resistance protein signature 195 210 - -
Apr9g1616 926 PRINTS Disease resistance protein signature 274 288 - -
Apr9g1616 926 PRINTS Disease resistance protein signature 371 385 - -
Apr9g1616 926 PRINTS Disease resistance protein signature 635 651 - -
Apr9g1616 926 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 164 438 IPR027417 -
Apr9g1616 926 Gene3D - 424 517 IPR036388 -
Apr9g1616 926 Gene3D - 335 423 IPR042197 -
Apr9g1616 926 Pfam NB-ARC domain 178 426 IPR002182 GO:0043531
Apr9g1616 926 Gene3D Ribonuclease Inhibitor 567 688 IPR032675 -
Apr9g1616 926 Gene3D - 158 326 IPR027417 -
Apr9g1616 926 Gene3D Ribonuclease Inhibitor 699 874 IPR032675 -
Apr9g1616 926 SUPERFAMILY L domain-like 505 850 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr9g1616 Apr-Chr9 25518909 25522977 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr9g1616 163 336 WRKY Transcription Factor Family AT4G12020 26.776 5.09e-11 65.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr9g1616 K13457 - pop:18094100 543.117