Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr9g1614 ATGGCTTTCACACTTGACAGGTGTGAAGATAGTATGGTGTTCACAATGGAGTCTCAGAAGTCAGTGCCTGCTCCCTTCCTGACAAAGACATACCAACTTGTTGATGACCCTTGCACTGATCACATTGTGTCTTGGGGTGATGATGAAACCACATTTGTTGTGTGGAGGCCCCCTGAGTTTGCTAGAGATCTTCTACCCAACTATTTCAAGCACAACAACTTCTCAAGCTTTGTTAGGCAACTAAATACCTATGGTTTCAAGAAGGTAGTTGCTGATAGGTGGGAGTTTGCAAATGAATACTTCAGAAAAGGAGCTAAGAACCTCTTATGTGAAATCCACAGGAGAAAAACCCCTCATCACTATCAACAACACTACCATGACCAACCACCACAGCTTCTTCAGCCTGATGAAAATCTCTGTTGGATTGATACTCCATCATCATCCCCTAAGTCCGGCACTGATATCCTAACAGCACTTTCTGAGGACAATCAAAGACTTAGGAGAAAGAACTTCATGCTCTTATCAGAACTCACTCACATGAAGAATCTGTACAATGACATTGTATATTTCATCCAAAACCATGTAAGTCCTGCTCCCTTTGAACAAAGAAGCAGCAATGCTATCTTGAAGCTTGTAGAATTGGACTCATCACCTCAATCACCAAATGTTATTAAACCAGCTAAGAACCGTGCTATGGAGAAGTCTTTGATAACTTGTAGTGAGGAGCCCAACAGTTCTGTGAAGCTCTTTGGTGTACCTCTTTGTGGCAAAAAGAGATTGCACTCAGGTAACTTTGATCAACCAGAATGA 810 0.4198 MAFTLDRCEDSMVFTMESQKSVPAPFLTKTYQLVDDPCTDHIVSWGDDETTFVVWRPPEFARDLLPNYFKHNNFSSFVRQLNTYGFKKVVADRWEFANEYFRKGAKNLLCEIHRRKTPHHYQQHYHDQPPQLLQPDENLCWIDTPSSSPKSGTDILTALSEDNQRLRRKNFMLLSELTHMKNLYNDIVYFIQNHVSPAPFEQRSSNAILKLVELDSSPQSPNVIKPAKNRAMEKSLITCSEEPNSSVKLFGVPLCGKKRLHSGNFDQPE* 270
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr9g1614 269 PANTHER HEAT SHOCK TRANSCRIPTION FACTOR 10 262 IPR027725 -
Apr9g1614 269 PRINTS Heat shock factor (HSF) domain signature 26 49 IPR000232 GO:0003700|GO:0006355|GO:0043565
Apr9g1614 269 PRINTS Heat shock factor (HSF) domain signature 64 76 IPR000232 GO:0003700|GO:0006355|GO:0043565
Apr9g1614 269 PRINTS Heat shock factor (HSF) domain signature 77 89 IPR000232 GO:0003700|GO:0006355|GO:0043565
Apr9g1614 269 SMART hsfneu3 22 115 IPR000232 GO:0003700|GO:0006355|GO:0043565
Apr9g1614 269 ProSitePatterns HSF-type DNA-binding domain signature. 65 89 IPR000232 GO:0003700|GO:0006355|GO:0043565
Apr9g1614 269 Pfam HSF-type DNA-binding 26 115 IPR000232 GO:0003700|GO:0006355|GO:0043565
Apr9g1614 269 PANTHER HEAT STRESS TRANSCRIPTION FACTOR B-4B 10 262 - -
Apr9g1614 269 Gene3D - 18 117 IPR036388 -
Apr9g1614 269 SUPERFAMILY "Winged helix" DNA-binding domain 23 115 IPR036390 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr9g1614 Apr-Chr9 25506204 25507359 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr9g1614 20 205 HSF AT1G46264 62.150 7.94e-88 263
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HSF Apr9g1614 HSF_DNA-bind 4.8e-32 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr9g1614 K09419 - gmx:100776060 453.366