Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr9g1602 ATGAGGAAGAAACTAGATACTCGTTTCCCTGCAGCTAGGATTAAGAAAATTATGCAAGCTGATGAGGATGTAGGAAAGATTGCAATGGCTGTGCCTCTTCTAGTTTCCAAAGCACTAGAGCTATTTCTGCAAGATTTGTGTGATCGAACGTATGAGATAACTTTGAGGAGGGGAGCAAAGACCGTGAACGCTTTTCATTTAAAACAGTGTGTGCAGACTTTTAATGTATTTGATTTTCTAAAAGATATTGTCAGCAAGGTTCCCGATTTAGGTGGTTCTGTTGCCACTGGTGATGATCATGCTGTCACTAAGAGGAGGAAAGTTGCTGAAGATGATGATAATGACAGTGACGAGGAGCCCAAGAGAAATAGGATGCCAGAGCATGGACATAACGGTGGAAGTGGAAGAGGAAGGGGAAGGGGCCGAGGCAGGGGTCGTGGCCGAGGAAGTAGAACAGTTGATCACGAGATGATTTCACATGTCAAATGTGAAGAAGATCCTGACATTTTGAAGCAAAATGACAGGCACACTCAAAGCAATGAAAGCATGGAAAATGTGTTGGAACCTGAAGAAGTTAAGCAGAACTTTCCAGTTAACAAACCGGCCGAAGTGTCTGTTCGAAATTTTGACTTAAATATGGACCCAGATGAGAACATGGATTCAATAGCTGTATCAACTTCTGTGCGAACTAGTTCACCTGCTAAGTCCATGTCAGAAGAGAAGCATGAGGAATACCTGGGATGGTCCTTGTCTGATGTGGAAAAAATGGCCATTGATCCCATGCAACTAGCCAACCTAAATAGGATTGATGAAGACGAAGAGGACTACGATGAAGAAATGTAG 843 0.4294 MRKKLDTRFPAARIKKIMQADEDVGKIAMAVPLLVSKALELFLQDLCDRTYEITLRRGAKTVNAFHLKQCVQTFNVFDFLKDIVSKVPDLGGSVATGDDHAVTKRRKVAEDDDNDSDEEPKRNRMPEHGHNGGSGRGRGRGRGRGRGRGSRTVDHEMISHVKCEEDPDILKQNDRHTQSNESMENVLEPEEVKQNFPVNKPAEVSVRNFDLNMDPDENMDSIAVSTSVRTSSPAKSMSEEKHEEYLGWSLSDVEKMAIDPMQLANLNRIDEDEEDYDEEM* 281
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr9g1602 280 MobiDBLite consensus disorder prediction 99 134 - -
Apr9g1602 280 Gene3D Histone, subunit A 1 86 IPR009072 GO:0046982
Apr9g1602 280 SUPERFAMILY Histone-fold 4 88 IPR009072 GO:0046982
Apr9g1602 280 MobiDBLite consensus disorder prediction 90 191 - -
Apr9g1602 280 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 8 71 IPR003958 -
Apr9g1602 280 PANTHER HISTONE SUPERFAMILY PROTEIN 1 279 - -
Apr9g1602 280 PANTHER HISTONE-LIKE TRANSCRIPTION FACTOR CCAAT-RELATED 1 279 - -
Apr9g1602 280 MobiDBLite consensus disorder prediction 147 178 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr9g1602 Apr-Chr9 25376290 25379257 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr9g1602 1 129 CCAAT-HAP5 Transcription Factor Family AT3G12480 69.630 4.55e-61 193
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YC Apr9g1602 CBFD_NFYB_HMF 3.1e-19 CL0012
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr9g1602 K21752 - gmx:100814800 432.565