Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr9g1600 ATGTCAAGTGGAGCAACACACTGGTGTTATGCATGCAGACAGCCAATTGTGCTTGAAGGGAGAGATGTTGTTTGCCCTTACTGTGATGGAGGATTTGTTCAAGAACTTAATGAGCTGCAAGGAATTGCACCCCACCATACCTTTTCATCACAGTCAGGAGAGTTTCATCAAATGCCTGATTTTTTCGATGCTATTCATGCTTTTGTGGGGCAGAGAGGTTCTGATCAGAGATTTGGGCTTATAGATGCTGTTGACAACTTCATGAGGCATAGAATGGCTGGAAGACACCCAAACTTTGATGTTAGAGGAAGGTCTGGTTCTTTACCAGTTCCTGAACAGAGTTGGGGTGTCTTTAGTTCTGGTCCTTATTTAATATTTCATGGTCAAGTTCCTGGATTCACCATGTCAAATGGCAGCCCGAGAGGTGGTCCTAGGCGTGTTGATTTTGGTGAATATTTTATGGGTCCTGGACTGGAAGAACTTATTGAGCAACTTACCATGAATGACCGCCGTGGTCCACCACCAGCTGCACGATCTTCAATCGATGCAATGCCAACTATTAAGATCACACAGGCACATCTTCGCTCGGATTCACACTGTCCAGTTTGTAAAGAAAAATTTGAACTAGGTTCTGAAGCCAGAGAGATGCCATGCAACCATATTTACCATTCTGATTGTATTGTTCCTTGGTTGGTTCAGCATAACTCATGTCCTGTTTGCCGTGTTGAGCTGCCACCTCATGGACATGTTAGTTCCCGCAGTGGCCGAAGTTGGGGAGGAAGGAATTCCAACAGCAACAGTAACGATGGTAGCTCCAGGGGCCAGGAGAATAGCCATCAGAACCACGGAAGGAGAAATCGACTGTCATTTTTGTGGCCGTTCCGCTCTTCTAGTTCAAACAATAATCATTATGCTGAGACAGGGGGAAGCAGCTCTTCAACCACTCCTGACCAGAATAATGGAACAAGTTATAGTGGATGGCCCTTTGATTACTAA 996 0.4518 MSSGATHWCYACRQPIVLEGRDVVCPYCDGGFVQELNELQGIAPHHTFSSQSGEFHQMPDFFDAIHAFVGQRGSDQRFGLIDAVDNFMRHRMAGRHPNFDVRGRSGSLPVPEQSWGVFSSGPYLIFHGQVPGFTMSNGSPRGGPRRVDFGEYFMGPGLEELIEQLTMNDRRGPPPAARSSIDAMPTIKITQAHLRSDSHCPVCKEKFELGSEAREMPCNHIYHSDCIVPWLVQHNSCPVCRVELPPHGHVSSRSGRSWGGRNSNSNSNDGSSRGQENSHQNHGRRNRLSFLWPFRSSSSNNNHYAETGGSSSSTTPDQNNGTSYSGWPFDY* 332
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr9g1600 331 PANTHER OS03G0351800 PROTEIN 1 314 - -
Apr9g1600 331 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 1 314 - -
Apr9g1600 331 SMART ring_2 200 240 IPR001841 -
Apr9g1600 331 MobiDBLite consensus disorder prediction 248 284 - -
Apr9g1600 331 MobiDBLite consensus disorder prediction 255 277 - -
Apr9g1600 331 SUPERFAMILY RING/U-box 180 247 - -
Apr9g1600 331 MobiDBLite consensus disorder prediction 301 331 - -
Apr9g1600 331 ProSiteProfiles Zinc finger RING-type profile. 200 241 IPR001841 -
Apr9g1600 331 Pfam Ring finger domain 199 241 IPR001841 -
Apr9g1600 331 Pfam zinc-ribbon 6 36 IPR039525 GO:0061630
Apr9g1600 331 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 163 247 IPR013083 -
Apr9g1600 331 CDD RING-H2_RNF126_like 200 241 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr9g1600 Apr-Chr9 25364757 25367134 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr9g1600 144 245 C3H Transcription Factor Family AT5G01980 45.192 4.23e-26 106
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr9g1600 K11982 - gmx:100813674 611.683
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr2g0023 2 365850 368739 Apr9g1600 9 25364757 25367134 PCT