Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr9g1597 ATGGGTTTTGATGAACAAAATAAACCGCATGAAGAATCACATGAGGCATCTCAGAAATCTGTGGCGACAGCAAGCGAGTGTGAATTTTGTGTCCAGAACTGTAACTCTGACACAACATCAACTGACCACAAAATATCCCACCTTCAAGCTCAAGGGAAAAATTTGGTCACAGAGCTTAATCCAATGTCTAAAGACAAATTTATGTGTTTTATTTGCAAGAAGGATTTTCCATCAAGGAAATCCTTGTGTGGGCATATGAGAACCCATCCTGACAGAAATTGGAGGGGTGTTCACCCTCCTATACCTTCTCTTCCTGCTCATAGCCACGATTCTAGCTCCAACTTAACGATGGAAAAGAACGAAAATCATTATTATTCCAATGCAATTGCTACACCAAAGAAAGAAGAACCTGTTGATCTATTAAAACATTTGCGAATGCTACCAGGATGGCAATTTGGGAAAAGAAGGAAGAAACGTGTTTATAGGAAAGAGGAAATTACAGCTGCTCAAATACTGGTGGATATCAGTCATGACACATGGCCACATGGTGTGCATCTCAAATCAGTACTTCAAATGGGGCATTTTGGAAATAATATGAAAGGAGCATCGAATGATATGAACACTAGAGATGAGGCTGGTACTGGTGGAGTAAAAGATTTAGTTCGTGACTTTGGTGAAATGAAGATGTCCAAGGAAAATAACAACGAGAATAGAAGAAAGTTGACAGTGAAATTGAAGAATCCATATTCAAGAGTTAAAGATGAGGCAGGAGATGGCTACAAATGTGATATTTGCTGTAGGTATTATCCAACGATCCTAGACTTTGTAGAAGACAGATTAAGCCACGCTAAAGAGAGGAATCTTAAGCGTAAGTCTTCAGATGGCGCAAGAGAAGCAGATCAATCAAGCAAAAAAGTTCATGGCTTTGATCTGAAAGAGTTGCCCGAGGATACGTAA 957 0.395 MGFDEQNKPHEESHEASQKSVATASECEFCVQNCNSDTTSTDHKISHLQAQGKNLVTELNPMSKDKFMCFICKKDFPSRKSLCGHMRTHPDRNWRGVHPPIPSLPAHSHDSSSNLTMEKNENHYYSNAIATPKKEEPVDLLKHLRMLPGWQFGKRRKKRVYRKEEITAAQILVDISHDTWPHGVHLKSVLQMGHFGNNMKGASNDMNTRDEAGTGGVKDLVRDFGEMKMSKENNNENRRKLTVKLKNPYSRVKDEAGDGYKCDICCRYYPTILDFVEDRLSHAKERNLKRKSSDGAREADQSSKKVHGFDLKELPEDT* 319
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr9g1597 318 MobiDBLite consensus disorder prediction 285 318 - -
Apr9g1597 318 ProSiteProfiles Zinc finger C2H2 type domain profile. 67 94 IPR013087 -
Apr9g1597 318 SMART c2h2final6 25 47 IPR013087 -
Apr9g1597 318 SMART c2h2final6 67 89 IPR013087 -
Apr9g1597 318 SMART c2h2final6 260 282 IPR013087 -
Apr9g1597 318 PANTHER C2H2 TYPE ZINC FINGER TRANSCRIPTION FACTOR FAMILY-RELATED 5 316 IPR044653 GO:0003700
Apr9g1597 318 PANTHER C2H2 TYPE ZINC FINGER TRANSCRIPTION FACTOR FAMILY 5 316 - -
Apr9g1597 318 SUPERFAMILY beta-beta-alpha zinc fingers 64 92 IPR036236 -
Apr9g1597 318 Gene3D Classic Zinc Finger 7 96 - -
Apr9g1597 318 ProSitePatterns Zinc finger C2H2 type domain signature. 69 89 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr9g1597 Apr-Chr9 25350100 25351137 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr9g1597 66 103 C2H2 Transcription Factor Family AT2G26940 55.263 9.92e-09 53.9
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Apr9g1597 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr9g1597 - - aprc:113874531 647.891