Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr9g1596 ATGTCATCTTCATCATCAAAGGGGGAAGATGCATCAATAGAGAATGAAATATTAAAGAAAGGGCCATGGACGGCGCAAGAAGATGAAATATTAGCAGCATACGTGACACAGCATGGAGTGGGAAATTGGAATGAAGTTCAAAGACGTACGGGACTTGCTCGTTGTGGAAAAAGTTGTCGTCTAAGATGGTCAAATCATTTGAGACCAGATTTGAGAAAGGGATCATTTTCTCCAGAAGAACAACGTAAAATCGTGGAGCTTCATGCCACAATGGGAAACAAATGGGCTAAAATGGCACAAGAGTTGCCTGGGCGCACAGACAATGAGATAAAGAACTTTTGGAACACAAGATTAAAGAAGAGGAGAAGAGCTGGGTTACCACTATACCCTGATGACATAAAACCAGCAACGTTGAACACTGCCAACCAAGGAAGTAGACTAAAGGACTCTACACAGCAAAATAATGACTCACAAATAGATACATCCATTAGTGTGCCCGAATTGATATTCGACTCATACAGTCTCAGTCAAAACCAGCTTCAGATACCACCAATTTTTGTAGAACAAGGTTCATATAATCCCATTATGCATCCCCCGGAGCAGCTTCATCAAGATTCACATGAGCTGTACAATTGTTTGGACAGTACTTGTGTGATCACTGCTGTTGCACCACCACGACGATTAATTGATAATCTAAGGACAAGCTACAGAAGTCAGTCCGGGGTTGATTACACGTCGGAGGGGAATGCATGTTTAAGTCCCTCTCTCCCCATCTTTGAGATGCCTCCATTCCCATCAACGTTGGATTTTTTGGTGGAAGAGCATAATCCACAATTGGAATCCATGTCTTACCCACCAACTAATTTGGAAGGTAATTCACATCACTGTTCCACGGATCCCAGTGAGGCACAAAAGGAACCAAATCCAGGCAATGAAGATGCTTTACCTCAGATCAATTGGTTAGAGGATTATCAGAAGATTGAAGATACTTTATTCTCAATTGTCCAACCCTATGTCAATAGGAATTAA 1029 0.4179 MSSSSSKGEDASIENEILKKGPWTAQEDEILAAYVTQHGVGNWNEVQRRTGLARCGKSCRLRWSNHLRPDLRKGSFSPEEQRKIVELHATMGNKWAKMAQELPGRTDNEIKNFWNTRLKKRRRAGLPLYPDDIKPATLNTANQGSRLKDSTQQNNDSQIDTSISVPELIFDSYSLSQNQLQIPPIFVEQGSYNPIMHPPEQLHQDSHELYNCLDSTCVITAVAPPRRLIDNLRTSYRSQSGVDYTSEGNACLSPSLPIFEMPPFPSTLDFLVEEHNPQLESMSYPPTNLEGNSHHCSTDPSEAQKEPNPGNEDALPQINWLEDYQKIEDTLFSIVQPYVNRN* 343
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr9g1596 342 SMART sant 19 69 IPR001005 -
Apr9g1596 342 SMART sant 72 120 IPR001005 -
Apr9g1596 342 MobiDBLite consensus disorder prediction 280 305 - -
Apr9g1596 342 Pfam Myb-like DNA-binding domain 73 116 IPR001005 -
Apr9g1596 342 Pfam Myb-like DNA-binding domain 20 67 IPR001005 -
Apr9g1596 342 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 15 67 IPR017930 -
Apr9g1596 342 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 68 122 IPR017930 -
Apr9g1596 342 ProSiteProfiles Myb-like domain profile. 68 118 IPR001005 -
Apr9g1596 342 MobiDBLite consensus disorder prediction 129 158 - -
Apr9g1596 342 MobiDBLite consensus disorder prediction 279 315 - -
Apr9g1596 342 ProSiteProfiles Myb-like domain profile. 15 67 IPR001005 -
Apr9g1596 342 CDD SANT 75 118 IPR001005 -
Apr9g1596 342 PANTHER TRANSCRIPTION FACTOR MYB33-RELATED 3 265 - -
Apr9g1596 342 MobiDBLite consensus disorder prediction 136 158 - -
Apr9g1596 342 Gene3D - 75 121 - -
Apr9g1596 342 CDD SANT 22 67 IPR001005 -
Apr9g1596 342 SUPERFAMILY Homeodomain-like 19 114 IPR009057 -
Apr9g1596 342 Gene3D - 19 72 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr9g1596 Apr-Chr9 25345410 25346665 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr9g1596 5 189 MYB Transcription Factor Family AT2G26960 50.510 5.43e-63 204
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Apr9g1596 Myb_DNA-binding 6.5e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr9g1596 K09422 - ccaj:109791291 303.138
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr9g1596 9 25345410 25346665 Apr9g1596 9 25345410 25346665 ECH
Apr2g0030 2 492898 498338 Apr9g1596 9 25345410 25346665 PCT