Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Apr9g1585 | ATGGCGAAGAAACGAAAGCTTCGATCCTCCGACCCCGAGCCCACCAAACCCATCGAACCACAGCAACAAGAGGACCAAGAGGCAGACAACAACAACATGGCCGTCGACGAAGACCACGCTCCGCTGCAGGAACAACAACAACCACAACCACAACCACAACCACAAATCGAAGAGCCCAACGCCGAAGAAGAAGAAGAAGAAGCACACGAAGAAGAAGATCAGGAGCCAGAACACGAAACCCTAGAAGATCAACAAGAGCAGGAACAGCAAGACGCGGAAGGTCCCAACCACGAAGCGAACGGTGCCGAAGAAGGAAACAACAACAACGAAGAAGAAGACCTTAGTCTCGAAGACGAGCCCGTTGAGAAGCTTCTGGAACCCTTCACGAAGGAGCAATTGCACTCTCTCGTCAAGCAAGCCGCTGAGAAGTATCCAGATTTCGTTGACAATGTTCGCCAGTTGGCTGATGTGGACCCCGCTCACCGGAAAATCTTCGTCCACGGTCTCGGATGGGATGCCACCGCCGAAACCCTAACTGCGGTATTCGGAAAATACGGCGAAATTGAAGATTGCAAGGCGGTTACCGACAAGGTCTCGGGGAAATCCAAGGGCTATGCCTTCATTTTGTTCAAGCACAGGGAGGGTGCTCGCAAGGCGCTTAAGAATCCTCAGAAGAAGATTGGAAATCGTACGACTTCCTGTCAATTGGCCTCCGCTGGACCCGTTCCAGCGCCGCCACCCAATGCTCCGGTGGTTTCTGAGTACACTCAGAGGAAGATATTTGTGAGCAATGTGAGTGCGGAGATTGATCCACAGAAATTGCTCGATTTCTTTAAGCAGTTTGGAGAGGTGGAGGATGGTCCGCTGGGTCTTGATAAGCAGACTGGGAAGCCTAAGGGTTTTGCGCTGTTTGTGTATAAATCTGTGGAGAGTGCTAAGAAGGCTTTGGAAGAGCCACACAAGAATTTTGAGGGACACACGTTGTATTGTCAGAAAGCTGTTGATGGGCCTAAGGGAAATAAGGGGTATCATCAGTATCATCAACAACAGCATCAGCACCATTCTCATCATCATCATCAGCCTCATTATCACTCAAGGAAGGATAAAAACAAGTATTCCTCTGGTGGTGGACCATCGCATGGAGGTGGTCACCTTATGGCGCCCTCCGCCCCTGCTGTTGGGGGTTTCAACCCCGGTGTTCCGGCGCAGGGGTTGAATCCAGCTCTTGGACAGGCATTAACTGCATTGCTTACAAATCAAGGAGCTGGGTTGGGGCTTGGGAACCTGCTTGGAGGTCTTGGCGGTGCACCGGTTAACCAGGCTGGGCCACCTGCTCCGTATGGGAATCAGCCTGCTATGGGCTATGGGAATCAACCAGGGATGCAACCGGGGTACCAGAATCCTCAAATGGGGCAGAGCAGTGGTGTCAGACCTCACCCCGGTGCTGGTGCTCCTTACATGGATACCCTCATAGATGCATCAATCTTTTTGTTTTGGACTCAGCTGATTCTTCTGAAGTACCAGGCACTATTCAAATGCATCTTTTTAATTTGTAATTTTAGTTACTATTTTATTACTAAAGAACCAGATTCTGAAACCTGTATTTTTCTCTTCATCTTAGTAGAATTTCCCCCTGACATGTTTTAA | 1647 | 0.4985 | MAKKRKLRSSDPEPTKPIEPQQQEDQEADNNNMAVDEDHAPLQEQQQPQPQPQPQIEEPNAEEEEEEAHEEEDQEPEHETLEDQQEQEQQDAEGPNHEANGAEEGNNNNEEEDLSLEDEPVEKLLEPFTKEQLHSLVKQAAEKYPDFVDNVRQLADVDPAHRKIFVHGLGWDATAETLTAVFGKYGEIEDCKAVTDKVSGKSKGYAFILFKHREGARKALKNPQKKIGNRTTSCQLASAGPVPAPPPNAPVVSEYTQRKIFVSNVSAEIDPQKLLDFFKQFGEVEDGPLGLDKQTGKPKGFALFVYKSVESAKKALEEPHKNFEGHTLYCQKAVDGPKGNKGYHQYHQQQHQHHSHHHHQPHYHSRKDKNKYSSGGGPSHGGGHLMAPSAPAVGGFNPGVPAQGLNPALGQALTALLTNQGAGLGLGNLLGGLGGAPVNQAGPPAPYGNQPAMGYGNQPGMQPGYQNPQMGQSSGVRPHPGAGAPYMDTLIDASIFLFWTQLILLKYQALFKCIFLICNFSYYFITKEPDSETCIFLFILVEFPPDMF* | 549 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Apr9g1585 | 548 | ProSiteProfiles | Eukaryotic RNA Recognition Motif (RRM) profile. | 162 | 239 | IPR000504 | GO:0003723 | |
| Apr9g1585 | 548 | SMART | rrm1_1 | 163 | 235 | IPR000504 | GO:0003723 | |
| Apr9g1585 | 548 | SMART | rrm1_1 | 259 | 331 | IPR000504 | GO:0003723 | |
| Apr9g1585 | 548 | Gene3D | - | 245 | 383 | IPR012677 | - | |
| Apr9g1585 | 548 | CDD | RRM_RBM24_RBM38_like | 258 | 333 | - | - | |
| Apr9g1585 | 548 | CDD | RRM_RBM24_RBM38_like | 162 | 237 | - | - | |
| Apr9g1585 | 548 | SUPERFAMILY | RNA-binding domain, RBD | 151 | 244 | IPR035979 | GO:0003676 | |
| Apr9g1585 | 548 | Pfam | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 164 | 231 | IPR000504 | GO:0003723 | |
| Apr9g1585 | 548 | Pfam | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 260 | 328 | IPR000504 | GO:0003723 | |
| Apr9g1585 | 548 | MobiDBLite | consensus disorder prediction | 347 | 366 | - | - | |
| Apr9g1585 | 548 | MobiDBLite | consensus disorder prediction | 1 | 23 | - | - | |
| Apr9g1585 | 548 | MobiDBLite | consensus disorder prediction | 338 | 390 | - | - | |
| Apr9g1585 | 548 | MobiDBLite | consensus disorder prediction | 58 | 89 | - | - | |
| Apr9g1585 | 548 | MobiDBLite | consensus disorder prediction | 1 | 117 | - | - | |
| Apr9g1585 | 548 | PANTHER | NUCLEOTIDE-BINDING ALPHA-BETA PLAIT DOMAIN-CONTAINING PROTEIN-RELATED | 1 | 477 | - | - | |
| Apr9g1585 | 548 | Gene3D | - | 154 | 240 | IPR012677 | - | |
| Apr9g1585 | 548 | ProSiteProfiles | Eukaryotic RNA Recognition Motif (RRM) profile. | 258 | 336 | IPR000504 | GO:0003723 | |
| Apr9g1585 | 548 | PANTHER | EUKARYOTIC TRANSLATION INITIATION FACTOR 3 SUBUNIT G | 1 | 477 | - | - | |
| Apr9g1585 | 548 | SUPERFAMILY | RNA-binding domain, RBD | 244 | 357 | IPR035979 | GO:0003676 |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Apr9g1585 | Apr-Chr9 | 25265475 | 25270173 | Dispersed/Transposed |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Apr9g1585 | 254 | 337 | C2H2 Transcription Factor Family | AT2G19380 | 29.762 | 5.35e-09 | 57.0 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Apr9g1585 | K12741 | - | gmx:100783742 | 633.639 |