Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr9g1580 ATGGATTCGCATGGGCCAAATGGAAAAGAAGACCAGGATGCTTTGCCCCCACCACCTCCAGTCTCATCAGATGGTGTACCCATCAAAGCTGAACTGGAGCAAATTAAGAAAAAGATTTCCAGGCTTCCAATAGCAAGGCGTGGTCTTGGGACAAGGGGGATGAAGATACAACTTCTCACCAATCACTTCAAAGTCAATGTTGCAAACAATGATGGCCACTTTTATCAGTATAGTGTAGCCGTTTCTTATGAAGATGGGCGACCTGTGGAAGGAAAGGGTGTAGGGAGGAAAGTGATAGATAGGGTGCAAGAAACTTATGATTCTGAGTTGAATGGGAAGGATTTTGCTTACGACGGTGAAAAGACTTTGTTTACCATTGGCTCCCTTGCACGCAACAAACTTGAATTTACAGTTGTTCTGGAAGATGTTACTTCTAACAGAAATAACGGAAACTGCAGCCCTGATGGTCATGGAAGTCCAAATGAGAATGATAGGAAAAGGATACGACGGCCTTATCGATCTAAGACATTCAAAGTTGAGATTAGCTTTGCTTCCAAAATTCCATTGCAGGCAATTGCCAATGCTCTACGTGGGCAGGAGTCGGAGCATTTTCAAGAAGCCATAAGAGTGTTGGATATTATTTTAAGGCAACATGCTGCTAAGCAAGGCTGCTTGCTTGTGCGTCAATCATTCTTCCACAATGATCCTAGGAATTTTACTGACGTAGGAGGAGGAGTGCTTGGCTGTAGAGGATTTCATTCTAGTTTTAGAACTACACAGAGTGGCTTGTCTCTGAACATAGATGTCTCAACCACCATGATAATTCAACCTGGGCCTGTGGTGGACTTCCTGATTTCCAATCAAAATGTGAGGGATCCCTATTCTCTTGACTGGGTGAAGGCCAAGAGGACCCTGAAAAATCTGAGGATTAAAACAAGCCCATCCAATCAAGAGTACAAAATTACTGGGCTCAGCGAACTCCCCTGCAAAGAACAAACGTTTACACTGAAGAGCAAAGGTGGAACGGATGGTGGCGACGCTCCCGAGGAAGTGACAGTCTATGATTATTTTGTTAATCATCGTAAGATAGATCTTCGCTATTCAGCTGATCTTCCCTGTATCAATGTTGGGAAGCCTAAACGTCCAACTTATTTCCCCCTTGAGCTTTGCTCTTTGGTATCCCTGCAACGTTATACAAAATCATTATCTACCCTTCAAAGGGCTTCATTGGTGGAGAAGTCCAGGCAGAAGCCACAGGAGAGAATGAAGGTCTTGTCTGAGGCTCTTAGAAGTAGCAATTATGGATCTGAACCCATGCTGCGTAATTGTGGAATTTCTATAAACTCTGGGTTTACTGAAGTTGAGGGTCGTGTTTTGCAAGCTCCAAGGTTGAAGTTTGGCAACGGGGAAGATTTCAATCCAAGGAATGGGAGATGGAATTTTAATAACAAGAAAATAGTGAAGCCAACCAAGATAGAAAGATGGGCTGTGGTTAACTTTTCTGCTCGCTGTGATGCTCGAGGACTTGTGCGTGATCTGATTAAATGTGGCAATATGAAAGGAATTATGATAGAACAACCTTTTGACATATTTGAAGAGAGTGGTCAGTTTAGGCGTGCCCCACCATTGGTTAGAGTGGAGAAGATGTTTGAATACATTCAGTCTAAACTTCCTGGGGCGCCCCAATTTCTTCTTTGTCTGCTTCCTGAACGGAAAAATTCTGATCTTTATGGTCCGTGGAAGAAAAAGAATCTTGCTGAATTTGGAATTGTTACTCAGTGCATAGCCCCTACAAGGGTCAATGACCAATATTTAACTAATGTACTGCTGAAGATCAATGCAAAGCTTGGTGGCCTGAATTCATTGTTAGGTGTTGAACTTTCTCCTTCCATTCCTGTTGTTTCCAAAACTCCCACCCTAATTCTTGGTATGGATGTATCCCATGGCTCTCCTGGGCAATCAGATATTCCTTCAATTGCAGCGGTGGTCAGCTCTAGGGAATGGCCTCTAATATCAAAGTACAGGGCATGTGTCCGTACCCAGTCTCCTAAGGTTGAAATGATTGATAATTTGTTCAAGAAAGTGTCAGAGAAGGAGGATGAAGGAATAATAAGGGAACTTCTGATTGATTTCTATTCAAGTTCTGGAAATAGAAAACCGGAAAATATAATCATATTCAGGGATGGTGTTAGTGAGTCACAGTTCAACCAAGTCCTAAACATTGAACTTAATCAAATTATTGAGGCCTGTAAATATCTTGATGAAAATTGGCATCCCAAGTTTTTGGTAATTGTTGCTCAAAAGAACCATCATACCAAATTCTTCCAGCCTGGATCTCCTGAAAACGTTCCTCCCGGAACTGTAATCGATAATAAAATTTGCCATCCTCGAAATTATGATTTCTACCTATGTGCACATGCTGGAATGATAGGTACAAGCAGGCCTACACACTATCACGTTCTGTTGGATGAGATTGGTTTTTCTCCTGATGATCTACAGGAACTTGTCCATTCCTTATCATATGTGTATCAGAGGAGCACCACTGCCATTTCTGTAGTTGCCCCAATTTGCTATGCTCACTTGGCTGCAACTCAGATGGGACAGTTTATGAAATTTGAGGAAAAATCGGAGACATCTTCCAGTCATGGTGGGTTGACTGCTCCTGGTGCTCCTCCTGTTCCTCAGTTACCTAAGTTGCAGGAGAAGGTCTGCAACTCAATGTTCTTTTGTTGA 2733 0.4252 MDSHGPNGKEDQDALPPPPPVSSDGVPIKAELEQIKKKISRLPIARRGLGTRGMKIQLLTNHFKVNVANNDGHFYQYSVAVSYEDGRPVEGKGVGRKVIDRVQETYDSELNGKDFAYDGEKTLFTIGSLARNKLEFTVVLEDVTSNRNNGNCSPDGHGSPNENDRKRIRRPYRSKTFKVEISFASKIPLQAIANALRGQESEHFQEAIRVLDIILRQHAAKQGCLLVRQSFFHNDPRNFTDVGGGVLGCRGFHSSFRTTQSGLSLNIDVSTTMIIQPGPVVDFLISNQNVRDPYSLDWVKAKRTLKNLRIKTSPSNQEYKITGLSELPCKEQTFTLKSKGGTDGGDAPEEVTVYDYFVNHRKIDLRYSADLPCINVGKPKRPTYFPLELCSLVSLQRYTKSLSTLQRASLVEKSRQKPQERMKVLSEALRSSNYGSEPMLRNCGISINSGFTEVEGRVLQAPRLKFGNGEDFNPRNGRWNFNNKKIVKPTKIERWAVVNFSARCDARGLVRDLIKCGNMKGIMIEQPFDIFEESGQFRRAPPLVRVEKMFEYIQSKLPGAPQFLLCLLPERKNSDLYGPWKKKNLAEFGIVTQCIAPTRVNDQYLTNVLLKINAKLGGLNSLLGVELSPSIPVVSKTPTLILGMDVSHGSPGQSDIPSIAAVVSSREWPLISKYRACVRTQSPKVEMIDNLFKKVSEKEDEGIIRELLIDFYSSSGNRKPENIIIFRDGVSESQFNQVLNIELNQIIEACKYLDENWHPKFLVIVAQKNHHTKFFQPGSPENVPPGTVIDNKICHPRNYDFYLCAHAGMIGTSRPTHYHVLLDEIGFSPDDLQELVHSLSYVYQRSTTAISVVAPICYAHLAATQMGQFMKFEEKSETSSSHGGLTAPGAPPVPQLPKLQEKVCNSMFFC* 911
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr9g1580 910 SUPERFAMILY PAZ domain 272 434 IPR036085 GO:0005515
Apr9g1580 910 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 2C 6 909 - -
Apr9g1580 910 SMART Piwi_a_2 563 871 IPR003165 GO:0003676
Apr9g1580 910 MobiDBLite consensus disorder prediction 147 170 - -
Apr9g1580 910 SUPERFAMILY Ribonuclease H-like 547 869 IPR012337 -
Apr9g1580 910 Gene3D - 630 910 IPR036397 GO:0003676
Apr9g1580 910 Pfam Argonaute linker 2 domain 420 466 IPR032472 -
Apr9g1580 910 Pfam Argonaute linker 1 domain 227 275 IPR014811 -
Apr9g1580 910 SMART DUF1785_2 225 277 IPR014811 -
Apr9g1580 910 Gene3D paz domain 271 398 - -
Apr9g1580 910 Pfam PAZ domain 281 410 IPR003100 GO:0005515
Apr9g1580 910 MobiDBLite consensus disorder prediction 1 26 - -
Apr9g1580 910 Pfam N-terminal domain of argonaute 55 215 IPR032474 -
Apr9g1580 910 CDD Piwi_ago-like 438 865 IPR045246 -
Apr9g1580 910 ProSiteProfiles PAZ domain profile. 297 394 IPR003100 GO:0005515
Apr9g1580 910 ProSiteProfiles Piwi domain profile. 563 871 IPR003165 GO:0003676
Apr9g1580 910 CDD PAZ_argonaute_like 277 393 - -
Apr9g1580 910 Pfam Piwi domain 564 871 IPR003165 GO:0003676
Apr9g1580 910 Gene3D - 458 624 - -
Apr9g1580 910 PANTHER TRANSLATION INITIATION FACTOR 2C, PUTATIVE-RELATED 6 909 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr9g1580 Apr-Chr9 25235511 25243246 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr9g1580 46 910 Eukaryotic Initiation Factors Gene Family AT5G43810 35.294 1.08e-163 502
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr9g1580 K11593 - gmx:100779439 1622.83