Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr9g1530 ATGATAGGGTTTGGAGGGAACAGTTGCAGTGAGCTTTCTTCGATGGACATGATGAACATGGAAACTAATAGGAAGTTTCTTTCTCTGCCTCTGAGTAACAACTCTGGTGCCCAAATGCGCAGTGATAATAGAAGGGTATCTGTCACTACTAGCATCGCTCAGGATCATAACTACACTCACCAGAACCACACCGACAATTGCAGTGTGAGGGATAAAATCATGGCACACCCTCTTTTTCCTCGTCTCTTGTCCTCTTACCTCAATTGCCTCAAGGTCGGGGCACCTCCTGAAGTGGTGGCTAGCTTAGAGGAGTCATGTGCTAAATGTGAATCCTTCAATGCATCATCAGGAAGGACAGGAAGTGGTTCAATAGGGGAAGATCCAGCTCTGGACCAGTTCATGGAGGCTTACTGTGAAATGCTCATTAAGTACGAGCAAGAGCTCACAAAACCCTTCAAAGAAGCCATGCTTTTCTTCTCAAGAATTGAGTGTCAGCTCAAAGCCCTAGCAGTTTCAACTACAGACTTTGGTCAAAGTGAATCATCTTCACTGAACGAGGTAGATGTGCATGAAAACAACCTTGATACTCAAGCTGAAGACCGGGAACTCAAGGTCCAGCTTTTGCGCAAGTATAGTGGATATCTAGGAAGCCTCAAGAAGGAATTTTTGAAGAAGAAAAAGAATGGAAAGTTGCCAAAGGAAGCTAGGCAACAGCTACTTGATTGGTGGAACAGGCACTACAAATGGCCTTATCCTTCGGAATCCCAAAAACAGGCACTTGCAGAATCCACAGGCCTAGATCTGAAGCAGATCAACAACTGGTTTATCAATCAGAGAAAACGCCATTGGAAGCCATCTGAGGATATGCAATTTGCCGTGATGGATGCAACTAACTACTACATGGAAAATGTTATGTGCAAGCCATTTCCCATGGATGGCATGCCTATGCTTCTTTAA 957 0.4451 MIGFGGNSCSELSSMDMMNMETNRKFLSLPLSNNSGAQMRSDNRRVSVTTSIAQDHNYTHQNHTDNCSVRDKIMAHPLFPRLLSSYLNCLKVGAPPEVVASLEESCAKCESFNASSGRTGSGSIGEDPALDQFMEAYCEMLIKYEQELTKPFKEAMLFFSRIECQLKALAVSTTDFGQSESSSLNEVDVHENNLDTQAEDRELKVQLLRKYSGYLGSLKKEFLKKKKNGKLPKEARQQLLDWWNRHYKWPYPSESQKQALAESTGLDLKQINNWFINQRKRHWKPSEDMQFAVMDATNYYMENVMCKPFPMDGMPMLL* 319
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr9g1530 318 Pfam Homeobox KN domain 242 281 IPR008422 GO:0003677|GO:0006355
Apr9g1530 318 PANTHER HOMEOBOX KNOTTED-LIKE PROTEIN 1 309 - -
Apr9g1530 318 CDD homeodomain 234 286 IPR001356 GO:0003677
Apr9g1530 318 SUPERFAMILY Homeodomain-like 224 296 IPR009057 -
Apr9g1530 318 ProSiteProfiles ELK domain profile. 202 222 IPR005539 GO:0003677
Apr9g1530 318 SMART ELK_2 202 223 IPR005539 GO:0003677
Apr9g1530 318 Pfam KNOX1 domain 69 110 IPR005540 GO:0003677|GO:0005634
Apr9g1530 318 SMART HOX_1 224 289 IPR001356 GO:0003677
Apr9g1530 318 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 1 309 - -
Apr9g1530 318 ProSiteProfiles 'Homeobox' domain profile. 222 285 IPR001356 GO:0003677
Apr9g1530 318 SMART KNOX2_2 120 171 IPR005541 GO:0003677|GO:0005634
Apr9g1530 318 Gene3D - 220 293 - -
Apr9g1530 318 Pfam KNOX2 domain 123 169 IPR005541 GO:0003677|GO:0005634
Apr9g1530 318 SMART KNOX1_2 67 111 IPR005540 GO:0003677|GO:0005634
Apr9g1530 318 Pfam ELK domain 202 223 IPR005539 GO:0003677
Apr9g1530 318 ProSitePatterns 'Homeobox' domain signature. 260 283 IPR017970 GO:0000981|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr9g1530 Apr-Chr9 24814585 24818011 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr9g1530 69 312 Homeobox Transcription Factor Family AT1G62360 68.482 3.55e-111 326
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-KNOX Apr9g1530 KNOX2 4.3e-22 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr9g1530 - - gmx:100791704 568.926