Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr9g1518 ATGCTCACAAATCTTGTTGAACTTGATTTATCAAGTAACAATCTCACTGGTGCTATTCCTTCAATTGGGAACTTGAGAAATTTAGAAGTACTTATCCTACTTAACAACCCTCTCTCTGGTCCTATTCCTGAGGAGTTTGGAAGACTCCATTCTCTCACAGTACTTAAATTGTTACTCAATGATTTGTCCGGGCCAATCCCATCTTCCATAGGAGACCTGTCCAATTTGAGATCACTTATACTTTTTGCTAATAAACTTAATGGATCCATTCCTTCCACCCTTGGAAACTTAACAAAACTCACCAAATTGGCCCTACATATGAACCAACTTTCCGGATCAATTCCTGTTTCCTTAGGAAACTTGGTCAATCTACAACAGCTTAACCTTGGATCAAACCATCTTTCTGGACCTATTCCTTCCACCCTTGGAAATTTGGCAAAGCTCACCCACCTAATTCTTCTTGACAACAACCTTAATGGTACTATACCACCAGCAATGAATAACCATACTGAACTCGTAAGCTTACAACTGGGTTCCAATGATTTTACTGGCCATTTGCCACAGCACATTTGCCTTGGTGGGTCACTTACACATTTTTCTGCTAATAATAACCATTTCACTGGTCCAATTCCAACAAGCTTAAAGAATTGTTCCTCCCTTCTTAGACTCAACCTAGCAAAAAACCAATTGAGTGGAAATATATTAGATGAGTTGGGTGTATATCCACATTTGGATTCCATTGATCTAAGCAGCAATAATTTTTGTGGCCACCTTTCACCAAATTGGGCGAAGTGCCATAGTCTCACAAGCCTTACAATGTCCAACAACAATTTATCCGGTGGCATACCCCCAGAGCTAGGGCAAGCACCCAAATTACAACGACTTCAACTCTCTTCAAATAATCTAAATGGAAAAATTCCAAAAGAACTTGGTAACTTGACATTGTATGTACTTCTCTTAAGTGACAATGAACTTTCTGGGTACATTCCCAAAGAAATTGGATCTTTGCTAGGCCTTGAGCGTCTGGAGCTTGCAGCAAACAATTTAGTTGGCCCAATTCCAAGCCAGCTCGGAGACTTGGTCAAATTGTGGAACTTAAACTTGAGCAATAATAGATTCTCAGATGCCATTCCCTCTGAATTAAACAAATTGCGGTCTCTTCAAATTCTTGATTTTAGTGGCAATTTGTTAAATGGGACAATACCAGAATCACTTGGAATGTTGCAAAGATTGGAAAACTTGAACCTCTCCCATAATCATCTCTCTGGCACCATTCCATCTAACTTTAAGAATATCTTGAGCTTGACAACTGTTGATGTATCTGACAACCAATTAGAGGGTCCAATTCCTGATATTCCAGCCTTTCTTAATGCTCCATTTGAAGCATTGAAAAACAATAAAGGCTTGTGTGGTAATGCCAAGTGCTTGGAGCCTTGCAAAGAGTTGAGTCACCAACATCATGGAAAAAAGAGAAGTGTCAAGATATTGGCACTATCCTTGACATTGAGTGCTCTATTTCTAGTACTGGTTGTGGTTGGAGTTTCTTTATGTATTTATTGTCAAGGAGAAAGAAAATCAGAAAAGGAGGTCACAAGAGAACAAAAAACTCAAGATTATTTTTCCATATGGGGTTATGATGGAAAAATAGTGTATGAAAATATCATTGAAGCCACAGAGGAGTTTGATGATAAATATCTCATTGGAGAAGGAGGGTCTGGAGCAGTTTACAAGGCTACCTTACCCTCTGGTCAGGTTGTTGCTGTGAAAAAACTTCATGCTGAGGTTGATACAGAAATGCTCAATTTAAAAGCTTTTACAAGTGAGGTTAGAGCCTTGACAGATATCAGACATCGTAACATTGTCAAGTTAAAAGGATTTTGTTCACATCCTCGCTTCTCTTTTCTAGTTTATGAGTTTCTTGAAGGGGGAAGCTTGGAGAAAGTACTAAATGATGATGCACAAGCAAAATTGTTTGATTGGAATAAGAGGGTGAACGTAGTTAAAGGTGTTGCAAGTGCTCTATATCATATGCATCACGGTTGCTCTCCTCCTATAGTTCATCGTGACATATCAAGCAAGAATGTTCTTATAGACTTGGAATATGAAGCTCGCATCTCTGACTTTGGAACTGCTAAGATTCTCAATACTGATTCACACAATTTAACCTCTTTTGCAGGCACATATGGGTATGCTGCTCCAGAGCTTGCTTATACTATGAAAACGAATGAGAAATGTGATGTGTTTAGCTTTGGTGTGGTTTCTTTGGAAATAATCATGGGAAAGCACCCACGAGATCTCATTTCTTTGTTGTTTTCATCGTCTACAACGCCATCAGCATCTAATTTGTTATTGAAGGACATGTTGGATGAACGACTTCGTGACCCAGTGAATAGAATTGTTCAAGATGTGATTTTAGTCGCAAAAATAGCATTTGCTTGTTTGAGTGAAACTCCACATTCTCGTCCTACCATGGAACAGGTGTATAGGGAATTTGTGATGCCAAAATCGCCTGTAGTTGATCCTTTTCCCATGATCACAATTGGTCAATTCCTAAATAATTGA 2562 0.3884 MLTNLVELDLSSNNLTGAIPSIGNLRNLEVLILLNNPLSGPIPEEFGRLHSLTVLKLLLNDLSGPIPSSIGDLSNLRSLILFANKLNGSIPSTLGNLTKLTKLALHMNQLSGSIPVSLGNLVNLQQLNLGSNHLSGPIPSTLGNLAKLTHLILLDNNLNGTIPPAMNNHTELVSLQLGSNDFTGHLPQHICLGGSLTHFSANNNHFTGPIPTSLKNCSSLLRLNLAKNQLSGNILDELGVYPHLDSIDLSSNNFCGHLSPNWAKCHSLTSLTMSNNNLSGGIPPELGQAPKLQRLQLSSNNLNGKIPKELGNLTLYVLLLSDNELSGYIPKEIGSLLGLERLELAANNLVGPIPSQLGDLVKLWNLNLSNNRFSDAIPSELNKLRSLQILDFSGNLLNGTIPESLGMLQRLENLNLSHNHLSGTIPSNFKNILSLTTVDVSDNQLEGPIPDIPAFLNAPFEALKNNKGLCGNAKCLEPCKELSHQHHGKKRSVKILALSLTLSALFLVLVVVGVSLCIYCQGERKSEKEVTREQKTQDYFSIWGYDGKIVYENIIEATEEFDDKYLIGEGGSGAVYKATLPSGQVVAVKKLHAEVDTEMLNLKAFTSEVRALTDIRHRNIVKLKGFCSHPRFSFLVYEFLEGGSLEKVLNDDAQAKLFDWNKRVNVVKGVASALYHMHHGCSPPIVHRDISSKNVLIDLEYEARISDFGTAKILNTDSHNLTSFAGTYGYAAPELAYTMKTNEKCDVFSFGVVSLEIIMGKHPRDLISLLFSSSTTPSASNLLLKDMLDERLRDPVNRIVQDVILVAKIAFACLSETPHSRPTMEQVYREFVMPKSPVVDPFPMITIGQFLNN* 854
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr9g1518 853 PANTHER LRR RECEPTOR-LIKE KINASE FAMILY PROTEIN 2 49 - -
Apr9g1518 853 PANTHER LRR RECEPTOR-LIKE KINASE FAMILY PROTEIN 30 851 - -
Apr9g1518 853 SMART LRR_typ_2 73 97 IPR003591 -
Apr9g1518 853 SMART LRR_typ_2 2 25 IPR003591 -
Apr9g1518 853 SMART LRR_typ_2 360 384 IPR003591 -
Apr9g1518 853 SMART LRR_typ_2 145 169 IPR003591 -
Apr9g1518 853 SMART LRR_typ_2 290 313 IPR003591 -
Apr9g1518 853 SMART LRR_typ_2 265 289 IPR003591 -
Apr9g1518 853 SMART LRR_typ_2 121 144 IPR003591 -
Apr9g1518 853 SMART LRR_typ_2 408 431 IPR003591 -
Apr9g1518 853 PANTHER LEUCINE RICH REPEAT FAMILY PROTEIN, EXPRESSED 2 49 - -
Apr9g1518 853 PANTHER LEUCINE RICH REPEAT FAMILY PROTEIN, EXPRESSED 30 851 - -
Apr9g1518 853 Gene3D Ribonuclease Inhibitor 169 482 IPR032675 -
Apr9g1518 853 Gene3D Ribonuclease Inhibitor 1 168 IPR032675 -
Apr9g1518 853 Pfam Leucine rich repeat 242 302 IPR001611 GO:0005515
Apr9g1518 853 Pfam Leucine rich repeat 74 134 IPR001611 GO:0005515
Apr9g1518 853 ProSiteProfiles Leucine-rich repeat profile. 4 26 IPR001611 GO:0005515
Apr9g1518 853 ProSiteProfiles Protein kinase domain profile. 561 839 IPR000719 GO:0004672|GO:0005524|GO:0006468
Apr9g1518 853 PRINTS Leucine-rich repeat signature 5 18 - -
Apr9g1518 853 PRINTS Leucine-rich repeat signature 408 421 - -
Apr9g1518 853 SUPERFAMILY L domain-like 223 471 - -
Apr9g1518 853 SUPERFAMILY Protein kinase-like (PK-like) 539 830 IPR011009 -
Apr9g1518 853 Pfam Protein kinase domain 563 829 IPR000719 GO:0004672|GO:0005524|GO:0006468
Apr9g1518 853 ProSitePatterns Tyrosine protein kinases specific active-site signature. 685 697 IPR008266 GO:0004672|GO:0006468
Apr9g1518 853 Gene3D Phosphorylase Kinase; domain 1 521 639 - -
Apr9g1518 853 SUPERFAMILY L domain-like 2 313 - -
Apr9g1518 853 ProSitePatterns Protein kinases ATP-binding region signature. 567 590 IPR017441 GO:0005524
Apr9g1518 853 Gene3D Transferase(Phosphotransferase) domain 1 640 836 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr9g1518 Apr-Chr9 24708981 24711964 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr9g1518 2 733 Receptor kinase-like Gene Family AT4G08850 49.324 0.0 674
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Apr9g1518 Pkinase 2.2e-45 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr9g1518 - - gmx:100800924 1085.48