Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr9g1500 ATGGAAAACTCAGACCACGACGAACCCGACAGGAAGAGGCCTCATCTCAGCTCTGTTTCTCCTCGGATGCCTCGAAATTCCACCAATTCTCCAACTGCTGATGCAGGAGTCTTACAGTTCCAGAATCAGCAGCTTGTTCAAAAGATAGACATCCAAAAGCATGCTTTGCATGATCTTGAAGGAAAAATTAGAGAGTTAAAAGAAAGGCAAAATTCTTACGAGGACTTGTTAATTGGATTGAATCAACTCTGGATTCAGTTGGTTGATGATATGATTCTTCTGGGTATACGAGCTGGCAGAGGCAAAGACGCATTGCAAAGTTTGACATATATCGATAATCCACAAGGTTCACTTCCTTTGTGTCCTGCGGATAATGTATTTCTATGTAGATTAATCCAGAAAGATTCCATGGAAGGAATCAGTCAAGATGAGATCATAAATTATGTTCAGGAGGCTCTTACTTTGCGCCAGTCATCTACAAGGGAGTTGTTGAAACTCCTTCAAGATACTATTGATTATCAGATGGAAAGAACAGCCAGTATAGCTCAGGTTTTAGATGGAGACTTATTGTCAGAAGATGCTATAATCCAAATGTCTAGGATTGATGATATGACGAAAGAGGAGGCAAATAATTTACATGAAGTGATTGATACTCTCCATGCAAAATGTAGAGAGTATACTGTTGGTATTCAAAATTATATCAACGAGTGCTTACAAAATCAATCTGACATTAAAGGCTTTACAGGTGAGCTTGATGAGATCCTGGCTGAACTTGAAGAGAGTAGAAGAAAACTAGTCAATCTGGAAATGCAAAAGGATCAAGCAATAGGGATGAATTCCCCCAACACTGATGCTTTGAATGGAAATCTGTCTCCTGAAAATCCTGCAGAAAGGACCATGAGTTTGCGTGAGTTGAAGGATTCAATTGAGGAAGCAAAGATAGTCGATGCTGATCGTCTTTCTGAGCTTCAAGATGCACGGGAAGATAATCGGACCTTGACAAAGCAATTCCAAGATCTTCAGAATGAACTGAATGATGATAAGTATGTGCGTTCTTCCCGAATATACTCTTTGGCTAATGATCAACTTCAACATTGGATGACTGAATTGGACCGATATAAAATGTTGGTAGAGTCTCTGCAGGCTGGCAATGTTCATGTCACAAAATGGGAGAAGGAACTAAATTTGAAATTGGAGTCTGTTGATAATGCAAGGCATATCCTTGACAATTCTGACCATAGAATTGATGAGCTAGAGCTTCAGTTGCAGAAGTGTATTATTGAAAAGAATGATCTTGAAATTAAGATGGAGGAAGCTATCCAGGACACTGGGAGAAAAGATATCAAATCTGAGTTTCATATTATGGCTTCAGCTTTATCTAAAGAAATGGGGATGATGGAAGCTCAATTGAAGCGATGGAAAGATGCAGCTCATGAGGCTGTCTCTTTACGTGAGAAAGCAAATTCACTGAGAGCTGCATTGAGTGCGAAGATTGAAAAGTTACAGAAGGAGAATCAGGAATTAGAATTTGTTCTGGATATGCACAGCCAGGAGAATTATGATAAAAGATATTCAGAAGTTAGAGAATCTGAAAGTAAAGCTCACACTCAAGCTGAATTACTGAAAAATGCTTTAGATGAACATAGTCTAGAGTTGAGAGTAAAAGCTGCTAATGAAGCTGAAACTGCTTGTGAACAAAGGCTTTCTACTGCAAAAGCTGAAATAGAGGACTTGAGGGCCAAGCTGGATGCATCTGAGAGGGATATTTTGGAGCTGACTGAGGCTGTTAAAGTTAAAGATGCTGAGTCAGAGGCATATATATCTGAAATTGAGACTATTGGTCAAGCATATGAAGATATGCAGACACAGAATCAACATCTGTTGCAGCAGGTGGCTGAGAGGGATGACTACAATATTAAGCTTGTATCAGAAAGTGTGAAGACAAAACAGGCACATAACACTTTACTGTCTGAGAAGCAAGCCTTAGCTAAGCAACTTCAACAAATTAATGCTTCGATAGAAAATTCAAAGATGAGGATTGCACACTATGAAGAGCAGCAGATGAAAGCTATTCTATCGGAAGGCATTAAATGTAATCAAGAAGAAAAACACCTTGTAGTCACCCTGGAATTTGCAAAGTGGGAGTTGGCTGATGCTGAGAAGGAGTTGAAGTGGCTCAAGTCAGCTGTTTCCTCTTCAGAGAAAGAATGCGACCAAATTCAGAACGAGACGGAAGCTATTCAAATGGAATTGGATAGTGAAAGGAGCTCGCGGAAGAAGCTTGAGGCAGAACTCAGTGAATTAAACAGCAAAATTGCTGAGATGACTTCTGAAAATGGAGAAACCACAATACAGAAACTCGAAAATGAAATAAGGATTTGCAAGAACATGATCAAGTGTACTGTCTGTACTGATCGTCCAAAGGAGGTTGTGATTGTCAAGTGCTATCATCTGTTCTGCAATCCATGCATACAAAGGAATCTAGAGCTTCGTCACCGCAAATGTCCTGCGTGTGGAACAGCCTTTGGACAGAGTGATGTTCGCTTTGTTAAAATATGA 2559 0.3974 MENSDHDEPDRKRPHLSSVSPRMPRNSTNSPTADAGVLQFQNQQLVQKIDIQKHALHDLEGKIRELKERQNSYEDLLIGLNQLWIQLVDDMILLGIRAGRGKDALQSLTYIDNPQGSLPLCPADNVFLCRLIQKDSMEGISQDEIINYVQEALTLRQSSTRELLKLLQDTIDYQMERTASIAQVLDGDLLSEDAIIQMSRIDDMTKEEANNLHEVIDTLHAKCREYTVGIQNYINECLQNQSDIKGFTGELDEILAELEESRRKLVNLEMQKDQAIGMNSPNTDALNGNLSPENPAERTMSLRELKDSIEEAKIVDADRLSELQDAREDNRTLTKQFQDLQNELNDDKYVRSSRIYSLANDQLQHWMTELDRYKMLVESLQAGNVHVTKWEKELNLKLESVDNARHILDNSDHRIDELELQLQKCIIEKNDLEIKMEEAIQDTGRKDIKSEFHIMASALSKEMGMMEAQLKRWKDAAHEAVSLREKANSLRAALSAKIEKLQKENQELEFVLDMHSQENYDKRYSEVRESESKAHTQAELLKNALDEHSLELRVKAANEAETACEQRLSTAKAEIEDLRAKLDASERDILELTEAVKVKDAESEAYISEIETIGQAYEDMQTQNQHLLQQVAERDDYNIKLVSESVKTKQAHNTLLSEKQALAKQLQQINASIENSKMRIAHYEEQQMKAILSEGIKCNQEEKHLVVTLEFAKWELADAEKELKWLKSAVSSSEKECDQIQNETEAIQMELDSERSSRKKLEAELSELNSKIAEMTSENGETTIQKLENEIRICKNMIKCTVCTDRPKEVVIVKCYHLFCNPCIQRNLELRHRKCPACGTAFGQSDVRFVKI* 853
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr9g1500 852 Coils Coil 401 442 - -
Apr9g1500 852 PANTHER RING FINGER PROTEIN-RELATED 10 852 IPR013956 GO:0004842|GO:0010390
Apr9g1500 852 SMART ring_2 800 838 IPR001841 -
Apr9g1500 852 Coils Coil 244 278 - -
Apr9g1500 852 Coils Coil 323 343 - -
Apr9g1500 852 MobiDBLite consensus disorder prediction 1 33 - -
Apr9g1500 852 Coils Coil 656 686 - -
Apr9g1500 852 CDD RING-HC_BRE1_like 798 839 - -
Apr9g1500 852 Coils Coil 484 518 - -
Apr9g1500 852 ProSitePatterns Zinc finger RING-type signature. 815 824 IPR017907 -
Apr9g1500 852 SUPERFAMILY RING/U-box 799 843 - -
Apr9g1500 852 ProSiteProfiles Zinc finger RING-type profile. 800 838 IPR001841 -
Apr9g1500 852 Coils Coil 49 83 - -
Apr9g1500 852 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 781 851 IPR013083 -
Apr9g1500 852 Pfam Zinc finger, C3HC4 type (RING finger) 799 841 - -
Apr9g1500 852 Coils Coil 709 778 - -
Apr9g1500 852 MobiDBLite consensus disorder prediction 1 17 - -
Apr9g1500 852 PANTHER E3 UBIQUITIN-PROTEIN LIGASE BRE1 10 852 - -
Apr9g1500 852 Coils Coil 561 595 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr9g1500 Apr-Chr9 24541231 24552660 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr9g1500 800 847 RAD5 or RAD16-like Gene Family AT5G05130 35.417 5.36e-07 51.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr9g1500 K10696 - gmx:100796610 1392.48