Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr9g1474 ATGGTTTCTAAGGAGCAAAAGAGAACAGCACTGCATGAGAAGCTGCAACATCTTCGTTCTATTACTAACTCTCACGCTCTGAACAGAACCTCGATCATAATTGATGCATCGAAGTATATCGAAAAGTTAAAGCAAAAAGTAGAAAGACTGAATCAAGAGATAGCCTCTGGAGAAACTTCAAATGCCCACAATCCCTTGCCTATGGTTACAGTGGAAACCCTAGAAAAGGGATTTCTCATAAATGTTTTCTCAGCAAAAGGGTGCTCAGGTCTGCTAGTTTCCATATTGGAGGCCTTTGAAGAGATGAGACTCACAGTGCTGGAAGCTAGGGTTTCTTGTACAGACACTTTTCGATTTCAAGCAGTTGGAGAAAATGAAGAACATGGCGAGACTATTGATGCACAAGCTGTGAAACAAGCAGTGGGACAAGCGATAAAGAATTGGAGCGAAACTACCGATCAAGACTAA 468 0.4167 MVSKEQKRTALHEKLQHLRSITNSHALNRTSIIIDASKYIEKLKQKVERLNQEIASGETSNAHNPLPMVTVETLEKGFLINVFSAKGCSGLLVSILEAFEEMRLTVLEARVSCTDTFRFQAVGENEEHGETIDAQAVKQAVGQAIKNWSETTDQD* 156
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr9g1474 155 PANTHER TRANSCRIPTION FACTOR SCREAM2-RELATED 2 154 - -
Apr9g1474 155 Coils Coil 33 60 - -
Apr9g1474 155 CDD ACT_UUR-ACR-like 90 145 - -
Apr9g1474 155 PANTHER TRANSCRIPTION FACTOR BHLH FAMILY-RELATED 2 154 - -
Apr9g1474 155 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 6 63 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr9g1474 Apr-Chr9 24314397 24315859 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr9g1474 1 141 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G10570 28.571 5.34e-06 43.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr9g1474 - - gmx:100306253 270.396
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr9g1474 9 24314397 24315859 Apr10g2165 10 34169066 34170481 ECH
Apr4g2116 4 30169893 30172058 Apr9g1474 9 24314397 24315859 ECH
Apr10g0823 10 20423980 20425370 Apr9g1474 9 24314397 24315859 ECH
Apr9g1474 9 24314397 24315859 Apr9g1474 9 24314397 24315859 ECH
Apr10g2165 10 34169066 34170481 Apr9g1474 9 24314397 24315859 PCT