Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr9g1460 ATGGGTGCTTATGATCAAGTTTCTGTTCGGCCCATGGATTCTTCTAGAAAGAGGAAAAGTAGGAGCCGAGGGGATGGGTCTAAATCTGTGGCTGAGACTTTGGCTAAGTGGAAGGAATACAATGAGCATCTTTATAGTAAAGATGATGCCAGACCAACTCGTAAAGCCCCAGCTAAAGGGTCAAAGAAAGGGTGCATGAAAGGAAAGGGAGGACCCCAAAACTCACAGTGTAACTACAGAGGTGTTAGGCAGAGGACATGGGGGAAATGGGTTGGGGAGATTAGGGAGCCAAATAGAGGAAGTAGGCTTTGGTTGGGAACCTTTTCTACTGCCCAAGAAGCTGCTCTTGCCTACGATGAAGCTGCTAGAGCCATGTACGGTCCATGTGCACGCCTCAACTTCCCCCACATATCAGATTATACTTCTGTCAAAGAAGCTTTGAGGGACTCTTCCTTGGCAGCATCATCTCCTTGTTCTTCAGTGGCAACTCCTGCAGCCTCTGACACAACTACTACATCCAATCAATCAGAGGTTTGTGCAGCTGAGGATGTTAAGGAGAAGCCTCTGCCTGTCAACATGAACAATATGGTTAATGCTTGTTACAATGCGTATGAAGCTGCCTCGCCTACTAGCAAAATAAAGCAAGAGCCTAAGGATGAGCCTCAGGATCTCCCTGATCCAGGGGGTGGTGAAATTCAAGATATCATACCTGAAGGAATGCATAATATTGGGCAGGTTGCAGAGGACGTAAATAAAGATCAGATGGACTTTTCTTGGTTTGATGGCTTTGATTTTAATGGTGATTACTTGAAGAGCTTTTCCATGGATGAGCTATTTCAGGTGGATGAACTTTTGGGGGATATAGATAATAATCCTATTGATAGCACTGGGTTGATGCAAGGTTTGGATTTTGGACAAATGGGTTTTCCTGGAGATAGTAATCCTCAGGTGGAGTCGCCTTCAAGCTTTTTCTATCAGTTACAAAACCCAGATGCTAAGTTGTTGGGAAGTTTGCCCCATATGGAACAAACACCGTCAAGTGTTGATTATGGATTAGATTTCTTGAAAACAGTAGAGCCGGGGGACTATAATGGTGGAGGGGAAGAACCGCGATTTCTTAATTTGGATGATGATCTGAACAATGGTTCAAAGGGAATGCAAATAAAGAAGGATGATTAG 1179 0.4427 MGAYDQVSVRPMDSSRKRKSRSRGDGSKSVAETLAKWKEYNEHLYSKDDARPTRKAPAKGSKKGCMKGKGGPQNSQCNYRGVRQRTWGKWVGEIREPNRGSRLWLGTFSTAQEAALAYDEAARAMYGPCARLNFPHISDYTSVKEALRDSSLAASSPCSSVATPAASDTTTTSNQSEVCAAEDVKEKPLPVNMNNMVNACYNAYEAASPTSKIKQEPKDEPQDLPDPGGGEIQDIIPEGMHNIGQVAEDVNKDQMDFSWFDGFDFNGDYLKSFSMDELFQVDELLGDIDNNPIDSTGLMQGLDFGQMGFPGDSNPQVESPSSFFYQLQNPDAKLLGSLPHMEQTPSSVDYGLDFLKTVEPGDYNGGGEEPRFLNLDDDLNNGSKGMQIKKDD* 393
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr9g1460 392 PRINTS Ethylene responsive element binding protein signature 79 90 IPR001471 GO:0003700|GO:0006355
Apr9g1460 392 PRINTS Ethylene responsive element binding protein signature 101 117 IPR001471 GO:0003700|GO:0006355
Apr9g1460 392 SMART rav1_2 78 141 IPR001471 GO:0003700|GO:0006355
Apr9g1460 392 MobiDBLite consensus disorder prediction 210 231 - -
Apr9g1460 392 SUPERFAMILY DNA-binding domain 78 136 IPR016177 GO:0003677
Apr9g1460 392 MobiDBLite consensus disorder prediction 359 392 - -
Apr9g1460 392 Pfam AP2 domain 77 127 IPR001471 GO:0003700|GO:0006355
Apr9g1460 392 PANTHER AP2 DOMAIN CLASS TRANSCRIPTION FACTOR 11 362 - -
Apr9g1460 392 MobiDBLite consensus disorder prediction 1 31 - -
Apr9g1460 392 MobiDBLite consensus disorder prediction 11 26 - -
Apr9g1460 392 ProSiteProfiles AP2/ERF domain profile. 78 135 IPR001471 GO:0003700|GO:0006355
Apr9g1460 392 PANTHER DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 2C 11 362 - -
Apr9g1460 392 MobiDBLite consensus disorder prediction 45 78 - -
Apr9g1460 392 Gene3D AP2/ERF domain 78 137 IPR036955 GO:0003700|GO:0006355
Apr9g1460 392 MobiDBLite consensus disorder prediction 154 178 - -
Apr9g1460 392 CDD AP2 77 136 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr9g1460 Apr-Chr9 24208664 24211860 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr9g1460 16 382 AP2-EREBP Transcription Factor Family AT2G40340 39.418 2.21e-68 218
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Apr9g1460 AP2 1.3e-13 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr9g1460 - K09286 gmx:100800134 609.757
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr9g1460 9 24208664 24211860 Apr9g1460 9 24208664 24211860 ECH