Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr9g1459 ATGGCGCAAAGAAAAAGGCGTTTAGATCAATCGAAGCATCCATTCAATTCTTACCCCTTTGAAGCAGTTGTGTTTGGCTCATGGCAAGCTGTGGAGTTCATAAAAATAGAGTCAGGAACTATGAGCATGCATTTTGTGGATAATCTTCATATGGCTATGGAGAAAGGCCCCTTGTCAGACATTAGGATAAGGTCAAGAAAAGCTACTTCAACAGATTGCTCCTGTTTTCTACGACCTGGAACTGATATATGTGTGTTATCAGCCCCTCAACAATCTGATGATTCGGATGGACTTAAACTGGAGCCTGTTTGGACTGATGCTAAAATAAGTTCTATACAGAGAAAACCTCATGAATCTGAGTGCTCATGTCAGTTTTATGTCAACATCTATGTTCATCAAGGTTCACTTGGCGCAGAGCTAAGAACTCTTAGTAAGGAGATTAAAGTAGTTGGAATCAATCAACTATCCATCCTCCAAAGACTTGATCATAATCCTTGTGAAGATCAGCACTATCGATGGGCCTTATCTGAGGACTGCTCTACATTGTCACACACTAAATTGCTTCTGGGAAAAATTTTAGGTGATCTTTCATGGTTAGTTGTTGCCTCTGTTGTAAAGAAAGTTTCATTCAGCATAAGATCAATAGAAAACAAGCTTGTGTATCAAATTTTGGGACATGATACTGTTGACACTTCATTGAACAGTGAGTCTCATATTAATGTTGTGAATTTCAAAGTAGACAATGGCTTGTTAGTACCCATTGTTTCTCAAGTTTCTACACCTAACAACACTAAGAGGGTTGACCATGTTCATGAAACCCAGCTAGATAATGTGTCACCATCTTATAACGTTGAGGGCTTGCGACGTTCCAAACGCCGGAATGTACAACCTGACCGTTATATTGGTTGTGAAAATGTTTCTGAGTTTGATGTTGGATCTTTTAGAAACAGGCCACCAGTTAAGATAGACATTTGTAATGATGATGAAATGTCAATGCCATTATCATGCCTGTTTGGTTTGCAGCAAAATGGTCCAGAAGAGGATACTGATGATGATCAAAAGGCAAACACCTGCCGGAAGCTTCTGGTGTACAATAGGAGGGCTAAATCCCGGAAGGTAAAGTCTGTTGATCATGATCAGGATGAACATCACAATCCACTTGCTATTGTTCCTCTTCCTGATCAAGGTGATCCAGTAGCTGTCGAGCATTGTGATATAAATGACAAGGTTACTAGAAGTTATGGACATCAATCTTCTGAAATTTCTTCCAAATATTATCATTTAACTAGTAGCGCTAAATTAAACAAGGACAATGTTAATTTGTTAGCTTTTGAGCCCCATAATATGCCTGCTAAGTTAGATGATGCAGAAAAGAGTGATGATTTTTCAGTGAGATATCATTATAGTTATGGCACACCCAAATTACAGAGAAAGAGTTTATGTGATCTGGATGATATGGTAGGTCTTGGAAATAGATGGGAAGGGATAAATTCCAGTAAAGGCGTTCAAGAAAGAAAATACCGTTCCACATATTTAAGAAGTAGAAATCATGGAGAAGAAAGGCCTCATAATTACAAAGACAGAACCTTAAATGCAGCAGCCTACAAGGATTTGATAAATTCATACTTAAAGAATATTAATACAAGGCCAACCAAAGAAGAACAACCTATTACTGACCAGTGGAAGCAAAACAAGACAACGAATGGCTTTGGGAAGAAGACAGAAACAGAGATATTCCATGGAGGGGATGCAGAAGAAATGTCTGAAATGGATATGTTGTGGAGAGAACTGGAAGTGTCATTGGCATCAAGTTATCTAGTTGAAGACACAGAGATTCAACATTCAGTTTGGCACCAAGAGGAGAAGCATAGCGCTGGACACGATTCAGAGCCAAAGGCTGATGAAGATGATGATTTTAATCTTTTCTCAACTCTTGCTTCTCCAGAGGAACCTGTCTCTCCAGAGGAACCTGTATCTGAAGAAAATGATAACGTTTGGGCATTAATTCCTGAACTTAGAAAAAAGTTGCATGCCCATCAGAAGAAAGCTTTTGAGTTTCTCTGGAAAAATATTGCAGGGTCTATGGAACCAGGACTTATGGAAGCAAAATCTAAAAGAAGAGGTGGCTGTGTGATATCTCATTCTCCTGGAGCTGGAAAAACTTTTCTCATTATCGCCTTTCTTGTTAGCTACTTGAAGTTGTTCCCAGGAAAGAGGCCTCTAGTTCTTGCTCCCAAAACAACACTTTATACTTGGTATAAAGAATTTATCAAATGGGAAATTCCTATACCAGTGTATCTAATTCATGGTCGTAGAACCTATAGGGTATTCAAGCAGAAATTAACGATCAATATTCCTGGAATTCCCAAGCCCACTGATGATGTCAAGCATGTTTTGGATTGCCTGGAGAAGATACAAAAATGGCATTCGCACCCAAGTGTTCTAATCATGGGCTATACGTCATTTTTAACATTGATGCGAGAAAATTCAAAGTTTGCACACAGAAAGTATATGGCTAAAGTATTGAGGGAAAGTCCTGGGATCCTGGTACTGGATGAAGGGCACAATCCTAGAAGCACTAAATCAAGGTTGAGAAAAGTGTTGATGAAAGTACAAACAGAATTGAGAATATTGCTTTCTGGTACATTGTTTCAGAACAATTTCTGTGAATACTTCAACACTCTGTGCTTGGCAAGACCAAAATTTACACATGAAGTACTGAAAGCTTTAGACCCAAAATACAGGAGGAAAGGGAAAGTAGCAGAAAAGGCACGTAATTTGTTAGAGTCACGGGCTAGAAAATTCTTCTTAGATAAAATTGCTAAGAAAATTGACTCAAATAATGGTGAGGAGAGGCTGCAAGGTCTAAACATGTTGAGAAATGTGACAAATGGTTTCATAGATGTTTATGAAGGCGGGAGTTCTGATGGTCTACCTGGTTTACAAATTTATACTTTACTAATGAATACAACTGATACCCAACATGAGATTTTGAAGAAACTGCACGAGAAAATGGCCAAGTGCAATGGGTACCCTCTGGAGTTGGAGCTTCTGATAACGCTTGGCTCAATACATCCTTGGTTGGTCAAAACAGCTGTATGTGCTGAGAAGTTTTTCACTCGGGAGCAATTGATGGACCTAGAGAAGTGCAAGTTTGATTTAAAAATAGGGTCAAAAGTAAGATTTGTTTTGAGCCTTATCTACCGTGTTGTCAAGAACGAGAAGGTTCTTATTTTTTGCCACAACATTGCACCTGTTAAATTATTCACAGAATATTTTGAGAAGTACTTTGGATGGCAAAAGGGCCGGGAAGTTTTAGTACTAACTGGGGAACTAGAACTCTTTGAACGAGGGAGAGTAATGGATAAGTTTGAGGAGCCTGGTGGAGTGTCAAAGATACTACTTGCTTCAATTACAGCTTGTGCAGAAGGCATTAGTTTGACTGCAGCTTCTCGTGTGATCATGTTGGACTCAGAGTGGAATCCATCAAAAACTAAGCAGGCTATTGCTCGGGCCTTTCGTCCTGGTCAGCAAAAAATGGTTTACGTGTATCAGCTCTTGGTAACTGCTTCATTGGAGGAAGATAAATATCGAAGAACCACTTGGAAAGAGTGGGTGTCAAGCATGATTTTTAGTGAGGCCTTTGTGGAGGACCCTTCACAGTGGCAAGCTGAGAAGATTGAAGATGATATACTGCGAGAAATGGTTGAGGAGGACCGGTCTAAATCGTTCCATATGATCATGAAGAATGAAAAGGCTTCAACCAACAAATGA 3774 0.3932 MAQRKRRLDQSKHPFNSYPFEAVVFGSWQAVEFIKIESGTMSMHFVDNLHMAMEKGPLSDIRIRSRKATSTDCSCFLRPGTDICVLSAPQQSDDSDGLKLEPVWTDAKISSIQRKPHESECSCQFYVNIYVHQGSLGAELRTLSKEIKVVGINQLSILQRLDHNPCEDQHYRWALSEDCSTLSHTKLLLGKILGDLSWLVVASVVKKVSFSIRSIENKLVYQILGHDTVDTSLNSESHINVVNFKVDNGLLVPIVSQVSTPNNTKRVDHVHETQLDNVSPSYNVEGLRRSKRRNVQPDRYIGCENVSEFDVGSFRNRPPVKIDICNDDEMSMPLSCLFGLQQNGPEEDTDDDQKANTCRKLLVYNRRAKSRKVKSVDHDQDEHHNPLAIVPLPDQGDPVAVEHCDINDKVTRSYGHQSSEISSKYYHLTSSAKLNKDNVNLLAFEPHNMPAKLDDAEKSDDFSVRYHYSYGTPKLQRKSLCDLDDMVGLGNRWEGINSSKGVQERKYRSTYLRSRNHGEERPHNYKDRTLNAAAYKDLINSYLKNINTRPTKEEQPITDQWKQNKTTNGFGKKTETEIFHGGDAEEMSEMDMLWRELEVSLASSYLVEDTEIQHSVWHQEEKHSAGHDSEPKADEDDDFNLFSTLASPEEPVSPEEPVSEENDNVWALIPELRKKLHAHQKKAFEFLWKNIAGSMEPGLMEAKSKRRGGCVISHSPGAGKTFLIIAFLVSYLKLFPGKRPLVLAPKTTLYTWYKEFIKWEIPIPVYLIHGRRTYRVFKQKLTINIPGIPKPTDDVKHVLDCLEKIQKWHSHPSVLIMGYTSFLTLMRENSKFAHRKYMAKVLRESPGILVLDEGHNPRSTKSRLRKVLMKVQTELRILLSGTLFQNNFCEYFNTLCLARPKFTHEVLKALDPKYRRKGKVAEKARNLLESRARKFFLDKIAKKIDSNNGEERLQGLNMLRNVTNGFIDVYEGGSSDGLPGLQIYTLLMNTTDTQHEILKKLHEKMAKCNGYPLELELLITLGSIHPWLVKTAVCAEKFFTREQLMDLEKCKFDLKIGSKVRFVLSLIYRVVKNEKVLIFCHNIAPVKLFTEYFEKYFGWQKGREVLVLTGELELFERGRVMDKFEEPGGVSKILLASITACAEGISLTAASRVIMLDSEWNPSKTKQAIARAFRPGQQKMVYVYQLLVTASLEEDKYRRTTWKEWVSSMIFSEAFVEDPSQWQAEKIEDDILREMVEEDRSKSFHMIMKNEKASTNK* 1258
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr9g1459 1257 CDD SF2_C_SNF 1051 1187 - -
Apr9g1459 1257 PANTHER SNF2 DOMAIN-CONTAINING PROTEIN CLASSY 2 20 615 - -
Apr9g1459 1257 PANTHER SNF2 DOMAIN-CONTAINING PROTEIN CLASSY 2 612 1255 - -
Apr9g1459 1257 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 1062 1223 IPR001650 -
Apr9g1459 1257 MobiDBLite consensus disorder prediction 370 394 - -
Apr9g1459 1257 Gene3D - 979 1257 IPR027417 -
Apr9g1459 1257 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 976 1240 IPR027417 -
Apr9g1459 1257 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 663 911 IPR027417 -
Apr9g1459 1257 SMART ultradead3 672 916 IPR014001 -
Apr9g1459 1257 MobiDBLite consensus disorder prediction 370 385 - -
Apr9g1459 1257 MobiDBLite consensus disorder prediction 617 638 - -
Apr9g1459 1257 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 701 901 IPR014001 -
Apr9g1459 1257 Gene3D - 651 943 IPR038718 -
Apr9g1459 1257 SMART helicmild6 1087 1176 IPR001650 -
Apr9g1459 1257 Pfam SNF2-related domain 680 944 IPR000330 GO:0005524|GO:0140658
Apr9g1459 1257 CDD DEXHc_ATRX-like 676 943 - -
Apr9g1459 1257 Pfam Helicase conserved C-terminal domain 1059 1175 IPR001650 -
Apr9g1459 1257 PANTHER SNF2 DOMAIN-CONTAINING PROTEIN CLASSY 2-RELATED 612 1255 IPR044567 GO:0080188
Apr9g1459 1257 PANTHER SNF2 DOMAIN-CONTAINING PROTEIN CLASSY 2-RELATED 20 615 IPR044567 GO:0080188
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr9g1459 Apr-Chr9 24190233 24198884 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr9g1459 1102 1194 RAD5 or RAD16-like Gene Family AT5G05130 39.583 8.74e-11 64.7
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Apr9g1459 SNF2_N 1.5e-17 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr9g1459 K10875 - gmx:100811703 2003.79
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr9g1459 9 24190233 24198884 Apr9g1459 9 24190233 24198884 ECH