Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr9g1444 ATGAATGATGATGTTCTATCTACAATGATGATCTCCCCAGGCTTGTTACCAACTGGATCTTTGCTAGATTCTTTGATTCATGTGTCAAATGAAGTTGGGTCAATGGAGAAGTTTCCCTTCATTAACATAAGGAACATTTCATCCATGATAAGGAGGATCAAGCTTCTTTCTTCATTGTTTGAAGAGATTCAAGTAACAGATACCCCACTTCCTCCTCCTTCAATCCTGTGTCTCACAGAACTCTTCTCTGTGATTAGTAGAGTGAAGGTTTTGATCCAAGAGAGCAAGGATAGAAGCTCTCTTTGGGGTCTCATCCAGTTAGAGTTCATTTCCAACCAATTTTATGTGCTTGTGAAGGAGATGGGAAGGGCCCTTGATATCTTGCCTCTAAAATTGCTCAACATAACAACAGATATAAGGGAACAAGTGGAGCTTCTTCACAAACAAGCAAAGAGGACTGAGTTACTAATTGATCCTCGAGAGCTTCAACGAAGAGAACAGCTTCTACAAGTAATGGCCAACAACAGTTTACAAAATAAGCAGAACAAAGGGTTTATTGATTTTGGAAAAGTGGAAGAGATATTAAGTAGCATTGGTTTAAGAACTCCATCAGATTATGATGGAGAAATATCAAAATTAGAAGCCGAAGCTCAGAATCAAGCAGGCACAGGAGGACTAATTGTTGTGTCCAATATAAACAATCTCATATCCCTTGTTTCTTATTCCAAATCCATGATATTCAGAGATGGATCAGAGAATGATAGAAATGAAGAAGAGTGTAAGCCACTATCTGCATTTTTATATAACAAAGTCCATGATAGTTCTTCATCCTCTCACTCCATGTCCATGACACCTAATATTCCTGATGAATTTCGTTGCCCAATTTCACTTGACTTAATGAGGGACCCTGTGATTGTATCATCAGGGCACACTTATGATAGAAATTCAATTGCTCAATGGATAAACTCTGGACACCACACTTGCCCCAAAAGTGGGCAAAGGCTCATTCACACTGCACTAATACCCAACTATGCATTGAAAAGCCTTGTACAGCAATGGTGCTATGACAACAATGTCCCAGTGAATGATCCCACGAGCGAGGGAAACAACAATAACAAGAAGTCGAATGAGGATGCCATTGACCATATTTCTGCAAACAAAGCAGCTGCAGATGCTGTCAAAATGACCGCAGAATTTCTGGTTGGAAAATTGGCAACTGGTTCCGCTGATATACAAAGACAAGCAGCATATGAACTACGGTTACTAGCAAAAACAGGCATGGATAACCGAAGAATCATAGCCGAGGTAGGGGCCATTCCCTTCCTTGTAACACTTCTAGGATCTCATGATTCAAGAATCCAAGAACATGCAGTGACAGCCCTGTTCAACCTCTCCATCTTTGACAACAACAAGATTTTGATCATGGCAGCTGGAGCGGTTGACAACATAGTAGAAGTACTCGAATCCGGGAAGACCATGGAGGCAAGAGAAAATGCTGCAGCATCAATATTTAGCTTGTCTATGGTAGATGAATGCAAGGTACAAATTGGAGCAAGACCAAGGGCAATACCTGCCTTAGTTGGACTTTTGAAAGAAGGTACTCCAATTGGGAAAAGAGATGCTGCAACTGCACTATTCAATCTTGCAGTTTACAATCCTAACAAGGCAAGTGTTGTTAAAGCTGGTGTAGTTCCTGTGTTGGTTGAGTTGTTGATGGATGATAAGGCTAGCATAACAGATGATGCCTTAGCCGTGCTTGCTTTGCTCCTTGGTTGCTCTCAAGGGCTAGAAGAGATAAGGAACAGTAGAGGATTGGTGCCACTTCTCATTGATCTTTTGAGATTTGGATCAGTGAAAGGAAAGGAAAATTCAATAACCCTTTTACTAGGATTGTGCAAAGAAGAAGGGGAAGTGGTGGCAAGGCGTCTATTGGCAAATCCAAGGAGCATTCCTTCACTTCAAAGCTTAGCTGCTGATGGTTCTTTGAGAGCTAGAAGAAAAGCAGATGCACTGCTTCGGTTGCTCAATAGGTGCTGCTCTCAACCTCATCATTCTCTTTGA 2061 0.4124 MNDDVLSTMMISPGLLPTGSLLDSLIHVSNEVGSMEKFPFINIRNISSMIRRIKLLSSLFEEIQVTDTPLPPPSILCLTELFSVISRVKVLIQESKDRSSLWGLIQLEFISNQFYVLVKEMGRALDILPLKLLNITTDIREQVELLHKQAKRTELLIDPRELQRREQLLQVMANNSLQNKQNKGFIDFGKVEEILSSIGLRTPSDYDGEISKLEAEAQNQAGTGGLIVVSNINNLISLVSYSKSMIFRDGSENDRNEEECKPLSAFLYNKVHDSSSSSHSMSMTPNIPDEFRCPISLDLMRDPVIVSSGHTYDRNSIAQWINSGHHTCPKSGQRLIHTALIPNYALKSLVQQWCYDNNVPVNDPTSEGNNNNKKSNEDAIDHISANKAAADAVKMTAEFLVGKLATGSADIQRQAAYELRLLAKTGMDNRRIIAEVGAIPFLVTLLGSHDSRIQEHAVTALFNLSIFDNNKILIMAAGAVDNIVEVLESGKTMEARENAAASIFSLSMVDECKVQIGARPRAIPALVGLLKEGTPIGKRDAATALFNLAVYNPNKASVVKAGVVPVLVELLMDDKASITDDALAVLALLLGCSQGLEEIRNSRGLVPLLIDLLRFGSVKGKENSITLLLGLCKEEGEVVARRLLANPRSIPSLQSLAADGSLRARRKADALLRLLNRCCSQPHHSL* 687
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr9g1444 686 Gene3D - 390 519 IPR011989 -
Apr9g1444 686 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 562 604 IPR000225 GO:0005515
Apr9g1444 686 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 521 563 IPR000225 GO:0005515
Apr9g1444 686 SMART Ubox_2 290 353 IPR003613 GO:0004842|GO:0016567
Apr9g1444 686 Pfam Armadillo/beta-catenin-like repeat 428 465 IPR000225 GO:0005515
Apr9g1444 686 Pfam Armadillo/beta-catenin-like repeat 552 587 IPR000225 GO:0005515
Apr9g1444 686 ProSiteProfiles U-box domain profile. 286 360 IPR003613 GO:0004842|GO:0016567
Apr9g1444 686 Pfam U-box domain 287 357 IPR003613 GO:0004842|GO:0016567
Apr9g1444 686 Gene3D - 520 678 IPR011989 -
Apr9g1444 686 PANTHER U-BOX DOMAIN-CONTAINING PROTEIN 1 18 683 - -
Apr9g1444 686 CDD RING-Ubox_PUB 291 333 IPR045210 -
Apr9g1444 686 SMART arm_5 551 591 IPR000225 GO:0005515
Apr9g1444 686 SMART arm_5 385 424 IPR000225 GO:0005515
Apr9g1444 686 SMART arm_5 426 466 IPR000225 GO:0005515
Apr9g1444 686 SMART arm_5 512 550 IPR000225 GO:0005515
Apr9g1444 686 SMART arm_5 592 633 IPR000225 GO:0005515
Apr9g1444 686 PANTHER U BOX DOMAIN-CONTAINING 18 683 - -
Apr9g1444 686 SUPERFAMILY RING/U-box 276 363 - -
Apr9g1444 686 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 268 365 IPR013083 -
Apr9g1444 686 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 437 479 IPR000225 GO:0005515
Apr9g1444 686 SUPERFAMILY ARM repeat 397 675 IPR016024 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr9g1444 Apr-Chr9 24094318 24096378 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr9g1444 19 681 U-box Gene Family AT3G46510 38.266 1.89e-128 393
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr9g1444 - - gmx:100793498 1130.93
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr9g1444 9 24094318 24096378 Apr9g1444 9 24094318 24096378 ECH