Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr9g1439 ATGGACGCCAACAGCAACTGTAACGGCGGCGGCTCTGACGGCAGCGATCGAGTTAAAGGTTCATGGAGTTCCCAGGAGGACGCCACGCTGTTGAAACTCGTGGACCAACACGGTCCACGCAACTGGTCCATCATAAGCAGCGGCATTCCCGGCCGTTCCGGCAAGTCTTGCCGTCTCCGGTGGTGCAACCAGCTCAGCCCTGAAGTGCAGCACCGTCCATTCACACCGTCAGAGGACAAAATCATCATCGACGCTCACGCCGTTCACGGCAACAAGTGGGCCACAATCTCGCGCCTCCTCCCTGGCCGCACCGACAACGCCATTAAAAACCACTGGAACTCCACCCTCCGCCGCCGTCGCATGGCCGAGCAATCCCCGACCTCGGTCTCCTCTGCGTCCTCGCCGGGGAAGCGGCCTTCATCGTTGGAACCAAATTATCCTTTAAAGAAGCCTTGCGTTGACGAAGTTTCGATGGAAACAGAGGACGAGAGAACAGAGGAATTTTCCCAATTAGCGAGTCCCGTAACGACGTCGTTAAGTCTTTTGCCTCCGGGCGAGAAAACAGAGAAAGATGAAGAAGAGTTTGAAGAGAATACGAAGACGGATGACCAGACTTACTTTATGGAAACGTTGCGGCGCATGATAGCAGACGAGGTTAGAAATCACGTGGAAAGTTTGCGCCGTGACAGGGAGAGTTTCTCCCATGGAACTGGGCTAGATCTTAATCCAAAGCTTCCAAAGTAA 744 0.5444 MDANSNCNGGGSDGSDRVKGSWSSQEDATLLKLVDQHGPRNWSIISSGIPGRSGKSCRLRWCNQLSPEVQHRPFTPSEDKIIIDAHAVHGNKWATISRLLPGRTDNAIKNHWNSTLRRRRMAEQSPTSVSSASSPGKRPSSLEPNYPLKKPCVDEVSMETEDERTEEFSQLASPVTTSLSLLPPGEKTEKDEEEFEENTKTDDQTYFMETLRRMIADEVRNHVESLRRDRESFSHGTGLDLNPKLPK* 248
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr9g1439 247 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 70 120 IPR017930 -
Apr9g1439 247 MobiDBLite consensus disorder prediction 169 183 - -
Apr9g1439 247 CDD SANT 73 116 IPR001005 -
Apr9g1439 247 Gene3D - 18 70 - -
Apr9g1439 247 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 14 69 IPR017930 -
Apr9g1439 247 ProSiteProfiles Myb-like domain profile. 14 65 IPR001005 -
Apr9g1439 247 SMART sant 70 118 IPR001005 -
Apr9g1439 247 SMART sant 18 67 IPR001005 -
Apr9g1439 247 SUPERFAMILY Homeodomain-like 16 112 IPR009057 -
Apr9g1439 247 Pfam Myb-like DNA-binding domain 22 80 - -
Apr9g1439 247 MobiDBLite consensus disorder prediction 1 23 - -
Apr9g1439 247 PANTHER OS01G0850400 PROTEIN 8 201 - -
Apr9g1439 247 MobiDBLite consensus disorder prediction 119 140 - -
Apr9g1439 247 MobiDBLite consensus disorder prediction 225 247 - -
Apr9g1439 247 MobiDBLite consensus disorder prediction 114 204 - -
Apr9g1439 247 Gene3D - 73 119 - -
Apr9g1439 247 ProSiteProfiles Myb-like domain profile. 66 116 IPR001005 -
Apr9g1439 247 CDD SANT 21 63 IPR001005 -
Apr9g1439 247 PANTHER MYB PROTEIN-RELATED 8 201 - -
Apr9g1439 247 MobiDBLite consensus disorder prediction 154 168 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr9g1439 Apr-Chr9 24036473 24037520 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr9g1439 15 139 MYB Transcription Factor Family AT3G50060 63.200 3.67e-54 174
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Apr9g1439 Myb_DNA-bind_6 7e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr9g1439 - - gmx:102661292 285.034
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr9g1439 9 24036473 24037520 Apr9g1439 9 24036473 24037520 ECH