Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr9g1438 ATGGTTTCTATTGTGCTTATGGAAAATTACTACTTTGCTGGCTGGCCTATGGCCACCAACCATGTTGCTCAATGCAACTCTGCACCAAACAGTGATCAATCTCCTTTTTCAGTCCCAACAAAAATACTCCCTCTTGCTTCTGACCCTGCCTCTCTTCAATTTGGTGAGTTCCCTTCATGGCCTACCCCCATTGAAGGGGCTGCAGAAGATAGACCTGCAAGTGCTTCCAAGAGCCACAGCCAAGCAGAGAAAAGGCGCAGGGACAGGATCAATGCACAACTTGCAACTCTCAGAAAACTGATTCCAAAATCTGATAAGATGGACAAGGCAGCTTTACTAGGGAGTGTGGTAGACCATGTGAAAGATCTAAAGCGAAAAGCCGAGGATGTCAGCAAAGCCATTACTGTTCCAACTGAAATTGATGAAGTAACAATTGACTATCACCCAGCTCAAGATGAAAGCTACACTACAGTAAACATATTAAAGGAAAACATAGTCATTAAAGCTTCTGTTTGCTGTGATGATAGACCAGAACTGTTTCCTGAGCTTGTTCAAGTCCTCAAAGGCTTGAGACTCACAGCAGTTAAAGCTGACATAGCAAGTGTGGGTGGAAGAATCAAAAGCATATTGGTACTTTGCTCTAAGGATAGGGAAGAGGGTAGTGTTTGCCTTAGCACTCTCAAACAATCCCTTAAATCAGCAGTGAACAAAATTGCTTCCTTATCCGTGGCAACAAATTGTCCCACTAGAAGCAAGAGGCAGAGGTTCTTCTTGCCATCTCATTATGTACAATAA 795 0.4327 MVSIVLMENYYFAGWPMATNHVAQCNSAPNSDQSPFSVPTKILPLASDPASLQFGEFPSWPTPIEGAAEDRPASASKSHSQAEKRRRDRINAQLATLRKLIPKSDKMDKAALLGSVVDHVKDLKRKAEDVSKAITVPTEIDEVTIDYHPAQDESYTTVNILKENIVIKASVCCDDRPELFPELVQVLKGLRLTAVKADIASVGGRIKSILVLCSKDREEGSVCLSTLKQSLKSAVNKIASLSVATNCPTRSKRQRFFLPSHYVQ* 265
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr9g1438 264 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 74 123 IPR011598 GO:0046983
Apr9g1438 264 CDD bHLH_AtAIG1_like 69 146 - -
Apr9g1438 264 PANTHER TRANSCRIPTION FACTOR BHLH51 43 263 - -
Apr9g1438 264 Gene3D - 69 132 IPR036638 GO:0046983
Apr9g1438 264 CDD ACT_UUR-ACR-like 170 205 - -
Apr9g1438 264 PANTHER TRANSCRIPTION FACTOR BHLH30 43 263 IPR045847 GO:0003700|GO:0006355
Apr9g1438 264 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 73 131 IPR036638 GO:0046983
Apr9g1438 264 SMART finulus 80 129 IPR011598 GO:0046983
Apr9g1438 264 Pfam Helix-loop-helix DNA-binding domain 77 123 IPR011598 GO:0046983
Apr9g1438 264 MobiDBLite consensus disorder prediction 61 88 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr9g1438 Apr-Chr9 24030513 24032029 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr9g1438 55 262 Basic Helix-Loop-Helix Transcription Factor Gene Family AT2G40200 45.540 2.08e-48 159
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Apr9g1438 HLH 8.3e-12 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr9g1438 - - gmx:100306102 414.075
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr9g1438 9 24030513 24032029 Apr9g1438 9 24030513 24032029 ECH
Apr10g2128 10 33927233 33929215 Apr9g1438 9 24030513 24032029 PCT