Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr9g1428 ATGTTTAAAATTGATAGGCTTATTGAGTTTATCCTGTCCTATTCTGCAGGATTTGTGGGCATGTGCAGTGGTTCAAAAAGTAAGCTTTCTTTCTCAAACCCCGTCATGGAGAATAACTATCAGAAGCAGAATCAAGATGGTCTCTACAACTTCTCAATCTTGCTTGAATTGTCTGCATCGGATGATTTTGAAGCTTTCAAAAGAGAAGTGAATGAGAAGGGCTTGGATGTCAACGAGGCTGGGTTTTGGTATGGTAGAAGGATAGGGTCAAAGAAGATGGGATCCGAAACAAGGACCCCTCTGATGATTGCTTCTTTGTTTGGAAGCACTAAGGTGCTGAAACATATTCTTGAAGGTGGAAGTGTTGATGTGAACAGGGTGTGTGGTTCTGATAGGGCCACTGCTCTCCATTGTGCTGTAGCTGGGGGTTCTGAATCCTCACTTGAGATTGTCAAGCTCTTGCTAGATGCAGGGGCAGATGCTGAGTTGATTGATGCAAGTGGGAATAAGCCGGTTAATCTGATTGCTCCTGCCTTTGATTCCTTGTCAAAATCGCGAAGGAAGGCTATGGAGTTGTTTCTGAGAGGTGGGGAAAGAGATGAACTCATGGAGCAAGAGATGTTCTCTGTTGTTTTCTCATCCAAAGAAGGTACAGAGAAAAAGGAAAAAGAAGGGAACGATAAGAAAGAATATCCTGTTGATATATCATTGCCTGATATAAACAATGGTATATATGGAACGGATGAGTTTAGGATGTACAGTTTCAAGGTGAAGCCGTGTTCGAGGGCTTACTCCCATGACTGGACTGAGTGTCCATTTGTTCATCCCGGCGAGAACGCAAGGAGGAGGGACCCAAGAAAATACCCTTATAGCTGTGTTCCTTGCCCAGAGTTTCGCAAAGGAACCTGCCAAAAGGGTGATTCCTGTGAATATGCTCATGGGGTTTTTGAGTCATGGCTACATCCTGCTCAATACAGAACTAGGCTTTGCAAGGATGAGACTGGCTGTACTAGAAAAGTCTGCTTCTTTGCTCACAAACCTGAAGAGTTACGCCCTGTGTATGCGTCCACTGGATCGGCCATGCCTTCCCCAAAATCTTATTCGTCTAGTGCACTTGACATGACAGCCATGAGTCCATTGGCCCTTAGTTCCACATCTTTGCCTATGCCAACTGTTTCAACCCCACCCATGTCTCCCTTGGCAGCTTCTTCATCTCCCAAGAGTGGAAGCTTGTGGCAGAACAAAATAAACCTTACTCCACCTTCCTTGCAGCTCCCGGGTAGCCGGCTGAAGACTACATTGAGTGCCAGGGATCTTGATCTAGAGATGGAACTGTCTTTCAGGAGCAAAGAATTCAGTAGAATTGGTGATTTGAATCCAACTAACCTTGATGACTTGTTAGCATCTGCTGATCCTTCAGTATTAACCCAATTACATGGACTTTCAACACCTACACAGTTGCAATCTCCAAGCGGCCTCCAGATGCGCCAAAACATGAACCACCTTCGCGCAAGTTACCCGTCCAACATCCCTTCCTCTCCTGTGAGGAAACCCTCAGCATATGGGTTTGATTCATCAGCTGCCGTTGCAGCAGCCGTGATGAATTCTCGATCTGCTGCATTCGCCAAGCGAAGCCAAAGCTTTATTGATCGCGGAGCTGCAACCCACCATCTTGGGCTGTCTTCAGCTCCCAACAACCCTTCCTGCAGGGTGTCCTCTGCCCTTTCAGATTGGAGTTCCCCCACTGGGAAACTGGATTGGGGTGTAAACGGAGACGAGCTTCACAAGCTGAGAAAATCTGCTTCTTTTGGGTTCAGAAACAATGGGGTAACTGCAACTGCATCGCCCATAGCACAACAGGAACATGCTGAGCCTGATGTCTCATGGGTTCATTCACTGGTAAAAGATGTTCCCTCAGAGAGTTCTGATATATTTGGTGCTGAGAAGCAGCAATATGATCTGAGTAAAGAGATGCTTCCACCATGGGTGGAGCAGGTGTATATAGAGCAGGAGCAGATGGTAGCATGA 2028 0.4635 MFKIDRLIEFILSYSAGFVGMCSGSKSKLSFSNPVMENNYQKQNQDGLYNFSILLELSASDDFEAFKREVNEKGLDVNEAGFWYGRRIGSKKMGSETRTPLMIASLFGSTKVLKHILEGGSVDVNRVCGSDRATALHCAVAGGSESSLEIVKLLLDAGADAELIDASGNKPVNLIAPAFDSLSKSRRKAMELFLRGGERDELMEQEMFSVVFSSKEGTEKKEKEGNDKKEYPVDISLPDINNGIYGTDEFRMYSFKVKPCSRAYSHDWTECPFVHPGENARRRDPRKYPYSCVPCPEFRKGTCQKGDSCEYAHGVFESWLHPAQYRTRLCKDETGCTRKVCFFAHKPEELRPVYASTGSAMPSPKSYSSSALDMTAMSPLALSSTSLPMPTVSTPPMSPLAASSSPKSGSLWQNKINLTPPSLQLPGSRLKTTLSARDLDLEMELSFRSKEFSRIGDLNPTNLDDLLASADPSVLTQLHGLSTPTQLQSPSGLQMRQNMNHLRASYPSNIPSSPVRKPSAYGFDSSAAVAAAVMNSRSAAFAKRSQSFIDRGAATHHLGLSSAPNNPSCRVSSALSDWSSPTGKLDWGVNGDELHKLRKSASFGFRNNGVTATASPIAQQEHAEPDVSWVHSLVKDVPSESSDIFGAEKQQYDLSKEMLPPWVEQVYIEQEQMVA* 676
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr9g1428 675 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 29 39 674 - -
Apr9g1428 675 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 294 314 IPR000571 GO:0046872
Apr9g1428 675 PANTHER UNKEMPT FAMILY MEMBER 39 674 IPR045234 -
Apr9g1428 675 Pfam Ankyrin repeats (3 copies) 94 163 IPR002110 GO:0005515
Apr9g1428 675 ProSiteProfiles Ankyrin repeat profile. 131 166 IPR002110 GO:0005515
Apr9g1428 675 Gene3D - 52 194 IPR036770 -
Apr9g1428 675 ProSiteProfiles Zinc finger C3H1-type profile. 289 316 IPR000571 GO:0046872
Apr9g1428 675 SMART ANK_2a 131 163 IPR002110 GO:0005515
Apr9g1428 675 SMART ANK_2a 96 126 IPR002110 GO:0005515
Apr9g1428 675 Gene3D - 291 352 - -
Apr9g1428 675 ProSiteProfiles Ankyrin repeat region circular profile. 131 165 - -
Apr9g1428 675 SUPERFAMILY Ankyrin repeat 47 175 IPR036770 -
Apr9g1428 675 SMART c3hfinal6 324 347 IPR000571 GO:0046872
Apr9g1428 675 SMART c3hfinal6 289 315 IPR000571 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr9g1428 Apr-Chr9 23921090 23924677 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr9g1428 49 636 C2H2 Transcription Factor Family AT5G12850 40.798 7.07e-141 426
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Apr9g1428 Ank_2 1.4e-07 CL0465
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr9g1428 - - gmx:100783376 1056.97
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr9g1428 9 23921090 23924677 Apr9g1428 9 23921090 23924677 ECH