Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr9g1409 ATGGAGGGGAAGGAGCAAGATGTTTCGTTGGGAGCCAACAAGTTCCCGGAGAGGCAGCCGATTGGAACGGCGGCGCAGAGCCAAGACGAGGGGAAGGACTACCAAGAACCACCACCCGCGCCGCTGTTTGAGCCGTCCGAGCTGACATCATGGTCGTTCTACAGAGCTGGGATAGCAGAGTTCGTGGCCACTTTTCTGTTCCTTTACATCACCATCTTGACCGTTATGGGCGTCAGCAGGTCCCCATCCAAGTGCCAATCTGTTGGTATTCAAGGAATCGCTTGGGCTTTCGGTGGCATGATCTTCGCCCTTGTTTACTGCACCGCTGGCATCTCAGGAGGTCACATAAACCCGGCGGTGACGTTCGGGCTGTTCTTGGCGAGGAAATTGTCGTTGACTAGAGCGCTGTTCTACATGGTGATGCAGGTGTTGGGTGCTATCTGTGGCGCTGGTGTGGTGAAGGGTTTCGAGGGAAAAACTAGGTACGGTTTGAACAATGGTGGTGCCAACTTTGTTAACCCTGGTTATACCAAAGGTGATGGCCTTGGTGCTGAGATTGTTGGTACCTTTATTCTTGTCTACACCGTCTTCTCCGCCACAGATGCCAAGCGTAACGCCAGAGACTCTCACGTCCCTATTTTGGCACCCTTGCCTATTGGGTTCGCTGTGTTCTTGGTGCACTTGGCTACCATCCCTATCACCGGAACTGGTATCAACCCTGCTCGCAGTCTTGGCGCCGCTATCATCTTCAACAAACACCTCGGTTGGCATGAACACGTACTGGATCTTCTGGGTGGGACCATTCATTGGCGCTGCTCTTGCGGCTCTCTACCATCAAGTTGTGATCCGTGCCATTCCCTTCAAGTCCAAGTGATCGAATCAAACGGTTCGTGA 894 0.5324 MEGKEQDVSLGANKFPERQPIGTAAQSQDEGKDYQEPPPAPLFEPSELTSWSFYRAGIAEFVATFLFLYITILTVMGVSRSPSKCQSVGIQGIAWAFGGMIFALVYCTAGISGGHINPAVTFGLFLARKLSLTRALFYMVMQVLGAICGAGVVKGFEGKTRYGLNNGGANFVNPGYTKGDGLGAEIVGTFILVYTVFSATDAKRNARDSHVPILAPLPIGFAVFLVHLATIPITGTGINPARSLGAAIIFNKHLGWHEHVLDLLGGTIHWRCSCGSLPSSCDPCHSLQVQVIESNGS* 298
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr9g1409 297 ProSitePatterns MIP family signature. 115 123 IPR022357 -
Apr9g1409 297 CDD MIP 55 268 IPR000425 GO:0015267|GO:0016020|GO:0055085
Apr9g1409 297 Pfam Major intrinsic protein 47 265 IPR000425 GO:0015267|GO:0016020|GO:0055085
Apr9g1409 297 PANTHER AQUAPORIN OR AQUAGLYCEROPORIN RELATED 1 268 IPR034294 -
Apr9g1409 297 Gene3D Glycerol uptake facilitator protein. 40 274 IPR023271 -
Apr9g1409 297 SUPERFAMILY Aquaporin-like 47 258 IPR023271 -
Apr9g1409 297 TIGRFAM MIP: MIP family channel proteins 59 265 IPR000425 GO:0015267|GO:0016020|GO:0055085
Apr9g1409 297 PRINTS Major intrinsic protein family signature 55 74 IPR000425 GO:0015267|GO:0016020|GO:0055085
Apr9g1409 297 PRINTS Major intrinsic protein family signature 97 121 IPR000425 GO:0015267|GO:0016020|GO:0055085
Apr9g1409 297 PRINTS Major intrinsic protein family signature 134 153 IPR000425 GO:0015267|GO:0016020|GO:0055085
Apr9g1409 297 PRINTS Major intrinsic protein family signature 184 202 IPR000425 GO:0015267|GO:0016020|GO:0055085
Apr9g1409 297 PRINTS Major intrinsic protein family signature 220 242 IPR000425 GO:0015267|GO:0016020|GO:0055085
Apr9g1409 297 PANTHER AQUAPORIN PIP1-2 ISOFORM X2 1 268 - -
Apr9g1409 297 MobiDBLite consensus disorder prediction 1 39 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr9g1409 Apr-Chr9 23696390 23698101 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr9g1409 1 293 Major Intrinsic Protein MIP AT2G45960 79.863 8.83e-170 471
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr9g1409 K09872 - gmx:100791447 486.878
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr9g1409 9 23696390 23698101 Apr9g1409 9 23696390 23698101 ECH