Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr9g1408 ATGAAGGAGGGTATGTCAGGCTTTTATATTAGATCAGGAAATGTGGGTGGTAATAAAAGTGGGAACACAAGTGGCACTAAGTGTGGGCGTTGGAATCCCACCACTGAACAAGTTAAACTTCTCACTGAACTCTTCAGGTCAGGGCTCCGCACCCCAAGCACTGATCAGATTCAAAAGATCTCCACTCAGCTAAGCTTTTATGGTAAGATAGAGAGCAAAAATGTGTTCTATTGGTTTCAGAACCATAAGGCTAGGGAAAGACAGAAGCGCCGTAAGGTCTCCTTTTATGAGAAGGATGTGATTCCTAGAGAAAATTTTATGAATGCTTCTACACAAAAGATGTATCAAGTTTCGGAGCCAGATAGGGTGATTGAGACTCTTCAACTCTTCCCCTTAAACTCCTTTGGTGAATCAGAATCAGAGAAGCTGGAGTACTTGCATGCAGATGAATGTGGGGGTAGTAATTCAATGTTTTCATACACATTGGGAGAACAAATGGAGCACCCACCATTAGACCTGCGCTTGAACTTTGTGTAA 537 0.4246 MKEGMSGFYIRSGNVGGNKSGNTSGTKCGRWNPTTEQVKLLTELFRSGLRTPSTDQIQKISTQLSFYGKIESKNVFYWFQNHKARERQKRRKVSFYEKDVIPRENFMNASTQKMYQVSEPDRVIETLQLFPLNSFGESESEKLEYLHADECGGSNSMFSYTLGEQMEHPPLDLRLNFV* 179
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr9g1408 178 CDD homeodomain 30 90 IPR001356 GO:0003677
Apr9g1408 178 SMART HOX_1 26 93 IPR001356 GO:0003677
Apr9g1408 178 MobiDBLite consensus disorder prediction 13 31 - -
Apr9g1408 178 Gene3D - 27 96 - -
Apr9g1408 178 ProSiteProfiles 'Homeobox' domain profile. 24 89 IPR001356 GO:0003677
Apr9g1408 178 Pfam Homeodomain 28 88 IPR001356 GO:0003677
Apr9g1408 178 PANTHER WUSCHEL-RELATED HOMEOBOX 1-RELATED 1 167 IPR044555 GO:0003700|GO:0099402
Apr9g1408 178 PANTHER WUSCHEL-RELATED HOMEOBOX 7 1 167 - -
Apr9g1408 178 SUPERFAMILY Homeodomain-like 21 93 IPR009057 -
Apr9g1408 178 MobiDBLite consensus disorder prediction 12 31 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr9g1408 Apr-Chr9 23683450 23684312 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr9g1408 8 178 Wox Gene Family AT3G11260 54.211 1.11e-60 184
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-WOX Apr9g1408 Homeodomain 5.8e-18 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr9g1408 - - pvu:PHAVU_008G226100g 274.248
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr9g1408 9 23683450 23684312 Apr10g2095 10 33662834 33663613 ECH
Apr9g1408 9 23683450 23684312 Apr9g1408 9 23683450 23684312 ECH
Apr10g2095 10 33662834 33663613 Apr9g1408 9 23683450 23684312 PCT