LGRPv2

Gene search

Sequence information

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Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Apr9g1389	ATGACCGAAGAAGACCGCTCCGCCGAGCCAACCGCACGTAATGGAGTCGCCGCCGAAGAGCTCGGAGGCGGCGGCGGCGAGGAGTTGGAAGTTGCGGGCGTTGATGCTGAGGTGTCGGTGGTTGGTGACGGCTCAGTCGCCGGAAGAGTGAAGGGACCTTGGTCGCCGGAGGAGGACACCGTGCTGAGCCGATTGGTGGCACAGTTCGGGGCGAGGAACTGGAGCATGATTTCCCGGGGAGTACCGGGGAGGTCCGGCAAGTCGTGCCGGCTCCGGTGGTGTAATCAGCTTGACCCTTCCGTGAAACGCAAGCCCTTCACCGAGGAAGAGGATAGTATTATAGTTTCAGCCCATGCAATCCATGGAAACAAATGGGCAGCAATTGCTAGGCTTCTTCCTGGTAGAACAGATAATGCCATCAAGAATCACTGGAATTCTACACTGAAGCGCAGGTGTATGGAACTGGGAAGATATGTCCCAGCACATGCTGATGTGATTGAAGATGGTAGTTTTGAAAAACCAAAGGCATCCTCTGAAGAAACCATGTCAATCAGGGATATAAACAATAATCCTGAAGAAGTCAGAAATTTCATGATGGATAATGAAAATAAACCTCCAAGAACAGATAATGCTACAGTGGAGGGACATCCTATCCTTTTTAGACCAGTAGCACGTATTAGTGCATTTAGTGTTTATAATCCTCAAGGCAGGCCAAGAACTGGATCATGTTCAAAGATGTTCCCAAGGCAGAGTCCTTTGATCCAATCCCCCAAACCAAATGTAGGATCCTGCAAGTTATTTGATGGTATTGGATGTGAGCCCACAGTTCCATTGCAATGTGGTCACGGCTGCTGTGCAACAGAATTGAGGGAAAGCCATTCGCACAGGTCACTTCTTGGTCCTGAGTTTGTTGACTATTTGGAGTCCCCCTCCTCCTCTAGTCATGAATTGATTTCAATAGTCACAGACTTAAACAATATAGCTTGGATCAAGAGTGGCCTTCAGAATCAAAGTGATGGGGAAATTGAGAATATAACAAATTTGACAGCATCTCAAGGGATTGCCACTGCCTCACAAACAAGCTTCTTAGGACAAGGTCTTAAGAATGACTACATGCAATTTGAGGAGGGACCTGGCAAGTTTTTGGGTGTGATGCAAGAAGTGTTATCGACAAAGATGGCTAGGCAACATTTTGCAATGCCTGCGGAAGTTTGA	1215	0.4807	MTEEDRSAEPTARNGVAAEELGGGGGEELEVAGVDAEVSVVGDGSVAGRVKGPWSPEEDTVLSRLVAQFGARNWSMISRGVPGRSGKSCRLRWCNQLDPSVKRKPFTEEEDSIIVSAHAIHGNKWAAIARLLPGRTDNAIKNHWNSTLKRRCMELGRYVPAHADVIEDGSFEKPKASSEETMSIRDINNNPEEVRNFMMDNENKPPRTDNATVEGHPILFRPVARISAFSVYNPQGRPRTGSCSKMFPRQSPLIQSPKPNVGSCKLFDGIGCEPTVPLQCGHGCCATELRESHSHRSLLGPEFVDYLESPSSSSHELISIVTDLNNIAWIKSGLQNQSDGEIENITNLTASQGIATASQTSFLGQGLKNDYMQFEEGPGKFLGVMQEVLSTKMARQHFAMPAEV*	405

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Annotation information

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Seq ID	Length	Analysis	Description	Start	End	IPR	GO
Apr9g1389	404	CDD	SANT	105	148	IPR001005	-
Apr9g1389	404	ProSiteProfiles	Myb-type HTH DNA-binding domain profile.	98	152	IPR017930	-
Apr9g1389	404	PANTHER	MYB PROTEIN-RELATED	25	337	-	-
Apr9g1389	404	SUPERFAMILY	Homeodomain-like	48	144	IPR009057	-
Apr9g1389	404	ProSiteProfiles	Myb-like domain profile.	51	97	IPR001005	-
Apr9g1389	404	Pfam	Myb-like DNA-binding domain	103	147	IPR001005	-
Apr9g1389	404	Pfam	Myb-like DNA-binding domain	51	97	IPR001005	-
Apr9g1389	404	Gene3D	-	105	151	-	-
Apr9g1389	404	CDD	SANT	53	95	IPR001005	-
Apr9g1389	404	ProSiteProfiles	Myb-type HTH DNA-binding domain profile.	49	97	IPR017930	-

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Duplication type information

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Select	Gene	Chromosome	Start	End	Duplicated_type
	Apr9g1389	Apr-Chr9	23522955	23528793	Wgd

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Functional genes information

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Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Apr9g1389	21	385	MYB Transcription Factor Family	AT3G55730	42.250	6.47e-97	293

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Transcription factors information

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Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	MYB	Apr9g1389		Myb_DNA-binding	4.7e-14	CL0123

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Pathway information

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Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Apr9g1389	K09422		-	gmx:100781228	622.083

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Event-related genes

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Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Apr9g1389	9	23522955	23528793	Apr9g1389	9	23522955	23528793	ECH

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