Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr9g1389 ATGACCGAAGAAGACCGCTCCGCCGAGCCAACCGCACGTAATGGAGTCGCCGCCGAAGAGCTCGGAGGCGGCGGCGGCGAGGAGTTGGAAGTTGCGGGCGTTGATGCTGAGGTGTCGGTGGTTGGTGACGGCTCAGTCGCCGGAAGAGTGAAGGGACCTTGGTCGCCGGAGGAGGACACCGTGCTGAGCCGATTGGTGGCACAGTTCGGGGCGAGGAACTGGAGCATGATTTCCCGGGGAGTACCGGGGAGGTCCGGCAAGTCGTGCCGGCTCCGGTGGTGTAATCAGCTTGACCCTTCCGTGAAACGCAAGCCCTTCACCGAGGAAGAGGATAGTATTATAGTTTCAGCCCATGCAATCCATGGAAACAAATGGGCAGCAATTGCTAGGCTTCTTCCTGGTAGAACAGATAATGCCATCAAGAATCACTGGAATTCTACACTGAAGCGCAGGTGTATGGAACTGGGAAGATATGTCCCAGCACATGCTGATGTGATTGAAGATGGTAGTTTTGAAAAACCAAAGGCATCCTCTGAAGAAACCATGTCAATCAGGGATATAAACAATAATCCTGAAGAAGTCAGAAATTTCATGATGGATAATGAAAATAAACCTCCAAGAACAGATAATGCTACAGTGGAGGGACATCCTATCCTTTTTAGACCAGTAGCACGTATTAGTGCATTTAGTGTTTATAATCCTCAAGGCAGGCCAAGAACTGGATCATGTTCAAAGATGTTCCCAAGGCAGAGTCCTTTGATCCAATCCCCCAAACCAAATGTAGGATCCTGCAAGTTATTTGATGGTATTGGATGTGAGCCCACAGTTCCATTGCAATGTGGTCACGGCTGCTGTGCAACAGAATTGAGGGAAAGCCATTCGCACAGGTCACTTCTTGGTCCTGAGTTTGTTGACTATTTGGAGTCCCCCTCCTCCTCTAGTCATGAATTGATTTCAATAGTCACAGACTTAAACAATATAGCTTGGATCAAGAGTGGCCTTCAGAATCAAAGTGATGGGGAAATTGAGAATATAACAAATTTGACAGCATCTCAAGGGATTGCCACTGCCTCACAAACAAGCTTCTTAGGACAAGGTCTTAAGAATGACTACATGCAATTTGAGGAGGGACCTGGCAAGTTTTTGGGTGTGATGCAAGAAGTGTTATCGACAAAGATGGCTAGGCAACATTTTGCAATGCCTGCGGAAGTTTGA 1215 0.4807 MTEEDRSAEPTARNGVAAEELGGGGGEELEVAGVDAEVSVVGDGSVAGRVKGPWSPEEDTVLSRLVAQFGARNWSMISRGVPGRSGKSCRLRWCNQLDPSVKRKPFTEEEDSIIVSAHAIHGNKWAAIARLLPGRTDNAIKNHWNSTLKRRCMELGRYVPAHADVIEDGSFEKPKASSEETMSIRDINNNPEEVRNFMMDNENKPPRTDNATVEGHPILFRPVARISAFSVYNPQGRPRTGSCSKMFPRQSPLIQSPKPNVGSCKLFDGIGCEPTVPLQCGHGCCATELRESHSHRSLLGPEFVDYLESPSSSSHELISIVTDLNNIAWIKSGLQNQSDGEIENITNLTASQGIATASQTSFLGQGLKNDYMQFEEGPGKFLGVMQEVLSTKMARQHFAMPAEV* 405
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr9g1389 404 CDD SANT 105 148 IPR001005 -
Apr9g1389 404 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 98 152 IPR017930 -
Apr9g1389 404 PANTHER MYB PROTEIN-RELATED 25 337 - -
Apr9g1389 404 SUPERFAMILY Homeodomain-like 48 144 IPR009057 -
Apr9g1389 404 ProSiteProfiles Myb-like domain profile. 51 97 IPR001005 -
Apr9g1389 404 Pfam Myb-like DNA-binding domain 103 147 IPR001005 -
Apr9g1389 404 Pfam Myb-like DNA-binding domain 51 97 IPR001005 -
Apr9g1389 404 Gene3D - 105 151 - -
Apr9g1389 404 CDD SANT 53 95 IPR001005 -
Apr9g1389 404 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 49 97 IPR017930 -
Apr9g1389 404 SMART sant 50 99 IPR001005 -
Apr9g1389 404 SMART sant 102 150 IPR001005 -
Apr9g1389 404 Gene3D - 50 102 - -
Apr9g1389 404 PANTHER MYB TRANSCRIPTION FACTOR-LIKE PROTEIN 25 337 - -
Apr9g1389 404 ProSiteProfiles Myb-like domain profile. 98 148 IPR001005 -
Apr9g1389 404 MobiDBLite consensus disorder prediction 1 29 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr9g1389 Apr-Chr9 23522955 23528793 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr9g1389 21 385 MYB Transcription Factor Family AT3G55730 42.250 6.47e-97 293
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Apr9g1389 Myb_DNA-binding 4.7e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr9g1389 K09422 - gmx:100781228 622.083
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr9g1389 9 23522955 23528793 Apr9g1389 9 23522955 23528793 ECH