Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr9g1388 ATGTTAATTACTGAGGACAAGTCTCATGTTGTTGTTGTTGACATAGACAATGGGTGTTGTTATCGGAGTTCTGCCGGCGGCGAAGGGTGTTCTGACTCCGGCGACCGGTCAGATGAGGAGCAAAGGTCATCCCATGATTCTGGGACTGAGATTGTGGGAGTTTGTGAAAAGGAGAGAGAATCCTCTGCATCAGAGTGTTCTGTTGAGGTGGATCTGGAAGGTGCAGTCTCTGAGGTGAAGGTGAATTTGGCTAATGTGGAGAGGGATTGTAGGATTTGCCATCTCAGCATGGATATGACCAACCATGAATCTGGGACCCCCATTGAGCTCGGATGTTCTTGCAAGGATGATTTGGCTGCTGCTCACAAACACTGTGCTGAGGCTTGGTTCAAGATCAAGGGAAACAAAACTTGTGAAATCTGTGGATCAATTGCACACAATGTTGCCGGTGCAATTGAAGTTCAAATGACAGAACAGTGGAATGAGGCAAGTGATGCTTCCATGGTGCCACCACCAGCACCACCCGCAGAAACTCGAAGTTTCTGGCAGGGTCACCGGTTTTTGAATTTCCTGCTAGCATGTATGGTCTTTGCCTTTGTTATATCCTGGCTTTTTCACTTTAATGTGCCCTCTTGA 636 0.4733 MLITEDKSHVVVVDIDNGCCYRSSAGGEGCSDSGDRSDEEQRSSHDSGTEIVGVCEKERESSASECSVEVDLEGAVSEVKVNLANVERDCRICHLSMDMTNHESGTPIELGCSCKDDLAAAHKHCAEAWFKIKGNKTCEICGSIAHNVAGAIEVQMTEQWNEASDASMVPPPAPPAETRSFWQGHRFLNFLLACMVFAFVISWLFHFNVPS* 212
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr9g1388 211 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 75 150 IPR013083 -
Apr9g1388 211 SMART ringv_2 89 142 IPR011016 GO:0008270
Apr9g1388 211 PANTHER OS01G0850200 PROTEIN 5 211 - -
Apr9g1388 211 CDD RING_CH-C4HC3_MARCH 90 142 - -
Apr9g1388 211 MobiDBLite consensus disorder prediction 25 50 - -
Apr9g1388 211 MobiDBLite consensus disorder prediction 32 50 - -
Apr9g1388 211 ProSiteProfiles Zinc finger RING-CH-type profile. 82 148 IPR011016 GO:0008270
Apr9g1388 211 Pfam RING-variant domain 90 141 IPR011016 GO:0008270
Apr9g1388 211 PANTHER ZINC FINGER, RING-CH-TYPE 5 211 - -
Apr9g1388 211 SUPERFAMILY RING/U-box 87 144 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr9g1388 Apr-Chr9 23517865 23519864 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr9g1388 31 211 C3H Transcription Factor Family AT5G05830 63.243 1.18e-74 222
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr9g1388 - - gmx:100818979 370.163
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr9g1388 9 23517865 23519864 Apr10g2077 10 33538392 33540294 ECH
Apr4g1967 4 28092535 28095457 Apr9g1388 9 23517865 23519864 ECH
Apr10g0672 10 16574928 16577420 Apr9g1388 9 23517865 23519864 ECH
Apr9g1388 9 23517865 23519864 Apr9g1388 9 23517865 23519864 ECH