Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr9g1370 ATGGCTCCTTCTTCAGATATCAATCATCTTTCTCATCCCTGTATATATGGGGATTATGTTTCTTCACGGTCAGAGAGAAAGTCTGGTTTTATGAAATGGCTTAGTAAGCTTTTCAGAGGTGGGTCCACTAGAGGAAGGGGTGGTCGTCATCTGCATGAGCCAGCAGAGGAAAGCATGGTTTGGGGTGCTCCATCTAAAGCGTTGGATGATCGCGCTAGAGCTCAGAAGGAGAAAGAGGACCTAGGCCAGGCAATGGCACTTTCTTCAGCCGAAGATTTAAAGAGACCAAATGCCCATCGAGGATATAGTTGGGGGGAAGACATTGGTGATGATTACTCAAAGGCACTTGAAGATACCCTGAACTCATCTGCACACCCTCCATATGCCCCTGCACCATTTTATCCCAGAGAATATAGAAGAATATGTGGTGGCTGCAACCAAGAGATAATCTATGGAAACTGTTTGGGATGCATGGATACTTATTTTCATCCAAACTGCTTTCGCTGCCACTCTTGTGGTTACCCTATCACAGAGCGTGAGTTTTCCTTGTCAGGGAAGCATCCATATCACAAGTCCTGTTTTAAAGAGTTGACCCACCCAAAATGCGAAGTTTGCTTCCAATTTATTCCTATAAATGCTGCTGGTTTGATTGAGTATAGGTGCCACCCCTTTTGGTCCCAAAAATATTGTCCATCTCATGAATATGATAACACAGCTCGTTGTTGTAGTTGTGAAAGATTAGAGCCTCGGAACATAAAATACTATAGACTAGAAGATGGAAGGAGTTTGTGCTTAGAGTGCATGGAATCTGCTATAATGGATACTGGTGACTGCCAGCCACTGTACCATTCTATAAGAGATTATTATGAAGGAATGCAGATGAGAATAGATCAACAAATTCCCATGCTTCTTGTTGAGAGAGAAGCGCTCAATGAAGCTATTGTTGGAGAAAAGAATGGTTTCCATCACTTACCAGAAACAAGGGGCTTATGCCTTTCAGAGGAGCAAACTGTCACCAGTATACATAGAAGGCCAAGAATTGGAGGCCATCGACTAATAGGAATGAGAACTCAACCTCAAAAGCTGTCTAGAAAATGTGAAGTTACAGCAATTCTTGTTCTATATGGTCTTCCGAGGAGTTCTCAAGTTTTTATGGGATGCAGGTTGCTCACAGGTGCTATACTTGCCCATGAATTGATGCATGCCTGGTTACGCCTTAAAGGTTACCGAAACCTTAATCCTGAAGTAGAGGAAGGCATCTGTCAGGTTCTTTCATATATGTGGCTGGAGTCAGAAGTAATGCCAAGCTTTCAAAGCATGCCATCCACATCCACAGCTGCTGCTTCTTCCTTTTCCTCAAAGAAAGGTGCAAAATCTCCCGTTGAAAATAAATTGGGTGAATTTTTCAAGAATCAGATTGCCAATGATTCTTCCCCAGCTTATGGTGGTGGCTTTAGAGCTGCTAATGAAGCTGTTAATAGATATGGTTTACGTAGTACCCTTGAGCACATTCGTTTGACTGGATTTTTCCCACTGTAA 1539 0.4276 MAPSSDINHLSHPCIYGDYVSSRSERKSGFMKWLSKLFRGGSTRGRGGRHLHEPAEESMVWGAPSKALDDRARAQKEKEDLGQAMALSSAEDLKRPNAHRGYSWGEDIGDDYSKALEDTLNSSAHPPYAPAPFYPREYRRICGGCNQEIIYGNCLGCMDTYFHPNCFRCHSCGYPITEREFSLSGKHPYHKSCFKELTHPKCEVCFQFIPINAAGLIEYRCHPFWSQKYCPSHEYDNTARCCSCERLEPRNIKYYRLEDGRSLCLECMESAIMDTGDCQPLYHSIRDYYEGMQMRIDQQIPMLLVEREALNEAIVGEKNGFHHLPETRGLCLSEEQTVTSIHRRPRIGGHRLIGMRTQPQKLSRKCEVTAILVLYGLPRSSQVFMGCRLLTGAILAHELMHAWLRLKGYRNLNPEVEEGICQVLSYMWLESEVMPSFQSMPSTSTAAASSFSSKKGAKSPVENKLGEFFKNQIANDSSPAYGGGFRAANEAVNRYGLRSTLEHIRLTGFFPL* 513
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr9g1370 512 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 137 167 - -
Apr9g1370 512 PANTHER TRANSCRIPTION FACTOR INTERACTOR AND REGULATOR LIM FAMILY-RELATED 20 512 - -
Apr9g1370 512 ProSitePatterns LIM zinc-binding domain signature. 142 176 IPR001781 -
Apr9g1370 512 ProSiteProfiles LIM domain profile. 140 200 IPR001781 -
Apr9g1370 512 Pfam Protein DA1 291 507 IPR022087 -
Apr9g1370 512 Gene3D Cysteine Rich Protein 129 199 - -
Apr9g1370 512 CDD LIM_DA1 142 194 - -
Apr9g1370 512 PANTHER PROTEIN DA1-RELATED 2 20 512 IPR045218 -
Apr9g1370 512 SMART lim_4 141 193 IPR001781 -
Apr9g1370 512 Pfam LIM domain 142 195 IPR001781 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr9g1370 Apr-Chr9 23319377 23324787 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Apr9g1370 DA1-like 8.9e-94 CL0126
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr9g1370 - - gmx:100784976 962.6
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr9g1370 9 23319377 23324787 Apr9g1370 9 23319377 23324787 ECH
Apr10g2063 10 33404696 33409091 Apr9g1370 9 23319377 23324787 PCT