Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr9g1354 ATGACAGGGTTCAGCTCATCATGTGGAGCATGCAAGTTCCTAAGGAGAAAATGCACGCGTGATTGTGTATTTGCTCCTTACTTTTCCTACGACGAGGCTCCAACCCATTTTGCAGCGGTGCATAAAATTTATGGTGCTAGTAACGTCTCAAAGCTATTGTCTCATCTTCCAATCCATAATAGAAGTGATGCTGCCATCACCATATCTTATGAAGCCTTGGCTCGCATGCAGGATCCTATATATGGTTGTGTTGCTCATATCTATGCATTGCAGCAACAGGTTGCCAGCTTGCAAGAGGAGATAGATACTCTTGGAAGTCTAATGGCAAATTCCAAGGTTAGTGTTGTCAATTGTGGCAGTGTCCAACCACCAATGAACTCAAACAACGGAATACATAGTATTTTGCAGCATGATGATACAAGGACACAATATTATCAAAATCAAATGGCTAATTTTCTTTCACAAGAAGGAAGTGCCACGGTTTACCAAAGTTTGGACAAACAGATGGATATAGAGCTTCCTAATGTACACGGATTTGAAGAATCTTCATTTGGCGATTGCAATCCCAATCCGTTAGAACAGTTCCTATCTGGAATTGACCAAGAGGTCTTCATGAATCATCCATGGTTCAAGCATAATGCAAACATAAAGAACTAG 657 0.4094 MTGFSSSCGACKFLRRKCTRDCVFAPYFSYDEAPTHFAAVHKIYGASNVSKLLSHLPIHNRSDAAITISYEALARMQDPIYGCVAHIYALQQQVASLQEEIDTLGSLMANSKVSVVNCGSVQPPMNSNNGIHSILQHDDTRTQYYQNQMANFLSQEGSATVYQSLDKQMDIELPNVHGFEESSFGDCNPNPLEQFLSGIDQEVFMNHPWFKHNANIKN* 219
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr9g1354 218 Pfam Lateral organ boundaries (LOB) domain 7 103 IPR004883 -
Apr9g1354 218 PANTHER LOB DOMAIN-CONTAINING PROTEIN 33 1 216 - -
Apr9g1354 218 ProSiteProfiles LOB domain profile. 6 108 IPR004883 -
Apr9g1354 218 PANTHER LOB DOMAIN CONTAINING PROTEIN 1 216 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr9g1354 Apr-Chr9 23156083 23157098 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr9g1354 1 144 AS2 family AT5G06080 59.477 1.21e-57 178
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Apr9g1354 LOB 6.6e-36 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr9g1354 K13945 - gmx:100787638 328.561
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr9g1354 9 23156083 23157098 Apr9g1354 9 23156083 23157098 ECH